miRNA display CGI


Results 61 - 80 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 26226 0.66 0.984253
Target:  5'- gGCCgggcgcgacGCCACgGGCCGcuuCACGGCcGCg -3'
miRNA:   3'- -CGGau-------UGGUGgUCGGUu--GUGUUGcCG- -5'
21702 3' -52.4 NC_004812.1 + 115402 0.66 0.984253
Target:  5'- cGCgUAgucGCCGCCccGCgCGGCGCGccgaccggcGCGGCg -3'
miRNA:   3'- -CGgAU---UGGUGGu-CG-GUUGUGU---------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 54930 0.66 0.984253
Target:  5'- cGCCU-GCCGCgAGaaGACGCccUGGCg -3'
miRNA:   3'- -CGGAuUGGUGgUCggUUGUGuuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 6454 0.66 0.984253
Target:  5'- cGCCgggacGACCGCgGGCCcGgGgAGCGGg -3'
miRNA:   3'- -CGGa----UUGGUGgUCGGuUgUgUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 7814 0.66 0.984253
Target:  5'- aGCCU-ACCugUcucGGCgGGCGucuCGGCGGCu -3'
miRNA:   3'- -CGGAuUGGugG---UCGgUUGU---GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 61855 0.66 0.984253
Target:  5'- gGCg-AACuCGgCGGCCAGCGCc-CGGCg -3'
miRNA:   3'- -CGgaUUG-GUgGUCGGUUGUGuuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 53394 0.66 0.984253
Target:  5'- cGCCUGaaccuGCCGCUcGUCcGCAgcGCGGCc -3'
miRNA:   3'- -CGGAU-----UGGUGGuCGGuUGUguUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 79399 0.66 0.984253
Target:  5'- gGCCg---CGCCAGCUGGCuCGGgGGCc -3'
miRNA:   3'- -CGGauugGUGGUCGGUUGuGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 63616 0.66 0.984253
Target:  5'- gGCCcgguCCugCGGCagCAGCACGACGa- -3'
miRNA:   3'- -CGGauu-GGugGUCG--GUUGUGUUGCcg -5'
21702 3' -52.4 NC_004812.1 + 75473 0.66 0.984253
Target:  5'- gGUCUGcuccGCgGCCgcGGCCAGgucCAGCGGCa -3'
miRNA:   3'- -CGGAU----UGgUGG--UCGGUUgu-GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 85609 0.66 0.984253
Target:  5'- cCCUGGCgGCCcuggcGGCCGACccGCGggccccGCGGUg -3'
miRNA:   3'- cGGAUUGgUGG-----UCGGUUG--UGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 85574 0.66 0.984253
Target:  5'- gGCCgccCCGCCAcCCgAACGCAACGcCg -3'
miRNA:   3'- -CGGauuGGUGGUcGG-UUGUGUUGCcG- -5'
21702 3' -52.4 NC_004812.1 + 40224 0.66 0.984067
Target:  5'- ---cGACCGCCcgcgccuGGCCGGCGgCGACGaGCc -3'
miRNA:   3'- cggaUUGGUGG-------UCGGUUGU-GUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 36298 0.66 0.984067
Target:  5'- cGCCgaGACCGgCGucGCCAcgaacucGCAC-ACGGCg -3'
miRNA:   3'- -CGGa-UUGGUgGU--CGGU-------UGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 143519 0.66 0.983878
Target:  5'- cGCCgucGGCCGCCucgagcauuuccGCCGugAacgaGGCGGCc -3'
miRNA:   3'- -CGGa--UUGGUGGu-----------CGGUugUg---UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 64629 0.66 0.983878
Target:  5'- aCCgucacAACCAUCGGCCGcgacaugcugcuCGCAACGcGCg -3'
miRNA:   3'- cGGa----UUGGUGGUCGGUu-----------GUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 104161 0.66 0.983688
Target:  5'- cCCUGGCCGucgggcugcuggucCUGGCCGGgcugGCGGCGGCc -3'
miRNA:   3'- cGGAUUGGU--------------GGUCGGUUg---UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 74150 0.66 0.983688
Target:  5'- cCCUGACCGgC-GCCAacguguucgcccugGCGCGcgaguACGGCu -3'
miRNA:   3'- cGGAUUGGUgGuCGGU--------------UGUGU-----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 18718 0.66 0.982308
Target:  5'- -aCUAucCCGuCCAGCguccuCGCGACGGCg -3'
miRNA:   3'- cgGAUu-GGU-GGUCGguu--GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 109513 0.66 0.982308
Target:  5'- cGCCgcgacggAGCCGggGGCCGAgGCGcccccggcgaucGCGGCg -3'
miRNA:   3'- -CGGa------UUGGUggUCGGUUgUGU------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.