miRNA display CGI


Results 81 - 100 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 79725 0.66 0.982308
Target:  5'- uCCUGGCCACCcuccgGGCgGACAUccccggggggugGACGuGCc -3'
miRNA:   3'- cGGAUUGGUGG-----UCGgUUGUG------------UUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 86659 0.66 0.982308
Target:  5'- gGCCgGGCCucguugaCGGCCAACACGAUcucucGCa -3'
miRNA:   3'- -CGGaUUGGug-----GUCGGUUGUGUUGc----CG- -5'
21702 3' -52.4 NC_004812.1 + 105393 0.66 0.982308
Target:  5'- gGUCUcGCUggcGCCGguGCCGGCGCu-CGGCg -3'
miRNA:   3'- -CGGAuUGG---UGGU--CGGUUGUGuuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3118 0.66 0.982308
Target:  5'- cGCCgAGCUcCUcGCCGG-GCAGCGGCg -3'
miRNA:   3'- -CGGaUUGGuGGuCGGUUgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 92634 0.66 0.982308
Target:  5'- cCCUucUgGCCGGCgaGGCGCAGCaGGCa -3'
miRNA:   3'- cGGAuuGgUGGUCGg-UUGUGUUG-CCG- -5'
21702 3' -52.4 NC_004812.1 + 50124 0.66 0.982308
Target:  5'- cCCgcGCC-CCAGCCAcggguuCGCGugGGg -3'
miRNA:   3'- cGGauUGGuGGUCGGUu-----GUGUugCCg -5'
21702 3' -52.4 NC_004812.1 + 80337 0.66 0.982308
Target:  5'- gGCCgcGCgCGCC-GUCGAgGCGGCGcGCg -3'
miRNA:   3'- -CGGauUG-GUGGuCGGUUgUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 50917 0.66 0.982308
Target:  5'- gGCCccGCCACCcGCCuuCGgGGCcccGGCg -3'
miRNA:   3'- -CGGauUGGUGGuCGGuuGUgUUG---CCG- -5'
21702 3' -52.4 NC_004812.1 + 121842 0.66 0.982308
Target:  5'- cGCUUGcggGCCGCggCGGCCGcgGCgACcACGGCg -3'
miRNA:   3'- -CGGAU---UGGUG--GUCGGU--UG-UGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 147691 0.66 0.982308
Target:  5'- uCCUGGCaACCGGCCcaaGCAG-GGCa -3'
miRNA:   3'- cGGAUUGgUGGUCGGuugUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 114774 0.66 0.982308
Target:  5'- gGUUgggGACCGCCgcGGCCAugcaGCACcuACGGUc -3'
miRNA:   3'- -CGGa--UUGGUGG--UCGGU----UGUGu-UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 100992 0.66 0.982308
Target:  5'- cGCCccagaaaGGCCGCCucGCgCGGCGCGA-GGCa -3'
miRNA:   3'- -CGGa------UUGGUGGu-CG-GUUGUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 118785 0.66 0.982308
Target:  5'- cCCccACC-CCGGCCccgcgGGCGCAGCGcGCc -3'
miRNA:   3'- cGGauUGGuGGUCGG-----UUGUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 18718 0.66 0.982308
Target:  5'- -aCUAucCCGuCCAGCguccuCGCGACGGCg -3'
miRNA:   3'- cgGAUu-GGU-GGUCGguu--GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 16153 0.66 0.982308
Target:  5'- ---cGGCCguGCCGGCUAcgguCGCGGCGGUg -3'
miRNA:   3'- cggaUUGG--UGGUCGGUu---GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 121921 0.66 0.982308
Target:  5'- cGCCUGGCuCACgCAcGCCu-CGCAGCuGGg -3'
miRNA:   3'- -CGGAUUG-GUG-GU-CGGuuGUGUUG-CCg -5'
21702 3' -52.4 NC_004812.1 + 128208 0.66 0.982308
Target:  5'- gGCCgagGugUACCGGgaagaGACGCuGCGGCu -3'
miRNA:   3'- -CGGa--UugGUGGUCgg---UUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 84696 0.66 0.982308
Target:  5'- gGCCaGGCCcgcACCGGggGACGCGucggACGGCg -3'
miRNA:   3'- -CGGaUUGG---UGGUCggUUGUGU----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 63559 0.66 0.982308
Target:  5'- gGCCggcagGGCCAggauuUUGGCCAGCu--GCGGCu -3'
miRNA:   3'- -CGGa----UUGGU-----GGUCGGUUGuguUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 120591 0.66 0.982308
Target:  5'- gGCCgacaucGCCGCCcGCCAcCGCAGCcuggaGCg -3'
miRNA:   3'- -CGGau----UGGUGGuCGGUuGUGUUGc----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.