miRNA display CGI


Results 101 - 120 of 1131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 114774 0.66 0.982308
Target:  5'- gGUUgggGACCGCCgcGGCCAugcaGCACcuACGGUc -3'
miRNA:   3'- -CGGa--UUGGUGG--UCGGU----UGUGu-UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 128627 0.66 0.982308
Target:  5'- cGCCgAGCUcCUcGCCGG-GCAGCGGCg -3'
miRNA:   3'- -CGGaUUGGuGGuCGGUUgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 44647 0.66 0.982308
Target:  5'- cGCCUGAgCGCCucuaucGCCGAaACGuuGCGGg -3'
miRNA:   3'- -CGGAUUgGUGGu-----CGGUUgUGU--UGCCg -5'
21702 3' -52.4 NC_004812.1 + 84696 0.66 0.982308
Target:  5'- gGCCaGGCCcgcACCGGggGACGCGucggACGGCg -3'
miRNA:   3'- -CGGaUUGG---UGGUCggUUGUGU----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 86659 0.66 0.982308
Target:  5'- gGCCgGGCCucguugaCGGCCAACACGAUcucucGCa -3'
miRNA:   3'- -CGGaUUGGug-----GUCGGUUGUGUUGc----CG- -5'
21702 3' -52.4 NC_004812.1 + 50917 0.66 0.982308
Target:  5'- gGCCccGCCACCcGCCuuCGgGGCcccGGCg -3'
miRNA:   3'- -CGGauUGGUGGuCGGuuGUgUUG---CCG- -5'
21702 3' -52.4 NC_004812.1 + 96194 0.66 0.982104
Target:  5'- cGCCggAGCgGguCCAgacgcgcgucgacGCgCAGCGCAACGGCu -3'
miRNA:   3'- -CGGa-UUGgU--GGU-------------CG-GUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 15948 0.66 0.982104
Target:  5'- uGCCgGGCUucgGCCGGgCGACGgacgccccgcggcCGGCGGCg -3'
miRNA:   3'- -CGGaUUGG---UGGUCgGUUGU-------------GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 30369 0.66 0.981691
Target:  5'- aGCCgcucGGCgGCCGGgucggggcucuccuCCGgggGCGCGGCGGCc -3'
miRNA:   3'- -CGGa---UUGgUGGUC--------------GGU---UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 16265 0.66 0.981058
Target:  5'- cGCCgcgGCCACCcacgcGCCGACgACGaacagaagagaccgcAUGGCg -3'
miRNA:   3'- -CGGau-UGGUGGu----CGGUUG-UGU---------------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 111184 0.66 0.981058
Target:  5'- aCCUGacggugGCCACCGcGCCccugcuucggugggcGACACcGCGGUc -3'
miRNA:   3'- cGGAU------UGGUGGU-CGG---------------UUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 9060 0.66 0.980408
Target:  5'- cGCCggcacccggaacccGCCGCCcGUCcAgGCGGCGGCg -3'
miRNA:   3'- -CGGau------------UGGUGGuCGGuUgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 60446 0.66 0.980188
Target:  5'- aCCUcGCCGCCGcccucgaaCCAGCGgaaGGCGGCg -3'
miRNA:   3'- cGGAuUGGUGGUc-------GGUUGUg--UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 13980 0.66 0.980188
Target:  5'- gGCCccGGCgGCCAGgagcgaguCCGACACGA-GGCu -3'
miRNA:   3'- -CGGa-UUGgUGGUC--------GGUUGUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 49153 0.66 0.980188
Target:  5'- gGCCcugggGAUCGgCGGCgAGucCGCGACGGCc -3'
miRNA:   3'- -CGGa----UUGGUgGUCGgUU--GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 25615 0.66 0.980188
Target:  5'- cGCCgccGCCGCCGuguccccgcGCCAGCugGcccuGCuGGCc -3'
miRNA:   3'- -CGGau-UGGUGGU---------CGGUUGugU----UG-CCG- -5'
21702 3' -52.4 NC_004812.1 + 28564 0.66 0.980188
Target:  5'- cGCCgcgauguucGGCCGgCAGCUGGCggACGACGuGCg -3'
miRNA:   3'- -CGGa--------UUGGUgGUCGGUUG--UGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 10305 0.66 0.980188
Target:  5'- cGCCUGAgCGCCGucugcuGCCGucccauccGCACcagaaaaucGGCGGCc -3'
miRNA:   3'- -CGGAUUgGUGGU------CGGU--------UGUG---------UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 17218 0.66 0.980188
Target:  5'- gGCCgguGCCGCUggAGCggggGACACGgaggguGCGGCg -3'
miRNA:   3'- -CGGau-UGGUGG--UCGg---UUGUGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 27068 0.66 0.980188
Target:  5'- gGCCgccGCCGCC-GCCGAgUGCcucACGGCc -3'
miRNA:   3'- -CGGau-UGGUGGuCGGUU-GUGu--UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.