miRNA display CGI


Results 41 - 60 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 3865 0.67 0.966672
Target:  5'- cGCCgcgGCCGCCgcGGCCcgcaAGCGCc-CGGCc -3'
miRNA:   3'- -CGGau-UGGUGG--UCGG----UUGUGuuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3880 0.7 0.869702
Target:  5'- gGCgcAGCuCGCgCAGCCAgaggcgcggGCGCGGCGGCg -3'
miRNA:   3'- -CGgaUUG-GUG-GUCGGU---------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3901 0.74 0.705073
Target:  5'- cGCCUccgaGGCCGCCcccGCC-ACGCGAgGGCc -3'
miRNA:   3'- -CGGA----UUGGUGGu--CGGuUGUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 3951 0.85 0.20371
Target:  5'- cGCgcGGCCGCCAGCCcgGGCACGGCGGCc -3'
miRNA:   3'- -CGgaUUGGUGGUCGG--UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3988 0.76 0.580123
Target:  5'- cGCCgAGCCcUCGGCCAGCGCcuccagcACGGCg -3'
miRNA:   3'- -CGGaUUGGuGGUCGGUUGUGu------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 4149 0.75 0.632299
Target:  5'- ---cGGCCGCCAGgCGGCGCugcGCGGCg -3'
miRNA:   3'- cggaUUGGUGGUCgGUUGUGu--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 4344 0.67 0.972692
Target:  5'- gGUCgUAGCgG-CGGCuCAugGCGACGGCg -3'
miRNA:   3'- -CGG-AUUGgUgGUCG-GUugUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 4384 0.77 0.518851
Target:  5'- cGCCaGGCC-CCAGCCGAaGCGGcCGGCg -3'
miRNA:   3'- -CGGaUUGGuGGUCGGUUgUGUU-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 4649 0.71 0.836074
Target:  5'- cGCCcgcgcggggaggGGCuCGCCGGCCGucGCGCGcCGGCg -3'
miRNA:   3'- -CGGa-----------UUG-GUGGUCGGU--UGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 4678 0.7 0.902663
Target:  5'- cGCCUcguCCACCu-CCGGCGCGccccagagccccggGCGGCu -3'
miRNA:   3'- -CGGAuu-GGUGGucGGUUGUGU--------------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 4722 0.67 0.959772
Target:  5'- cGCCcaGGCCGCCGuagagcacgcGCCccgGGgGCGGCGGCu -3'
miRNA:   3'- -CGGa-UUGGUGGU----------CGG---UUgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 4947 0.73 0.765047
Target:  5'- cGCUggagGGCgGCCGGCgGGCGgcCGGCGGCg -3'
miRNA:   3'- -CGGa---UUGgUGGUCGgUUGU--GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 5028 0.7 0.891343
Target:  5'- gGCCgacGACCcCgGGCCGggggcGCGCGAgGGCg -3'
miRNA:   3'- -CGGa--UUGGuGgUCGGU-----UGUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 5259 0.68 0.951945
Target:  5'- cGCCgagucGGCCGCCgcGGCCccGCGCu-CGGCc -3'
miRNA:   3'- -CGGa----UUGGUGG--UCGGu-UGUGuuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 5331 0.74 0.725427
Target:  5'- cGCCggggcGCCGCCcggGGUCGgcggggGCGCGGCGGCg -3'
miRNA:   3'- -CGGau---UGGUGG---UCGGU------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 5400 0.73 0.765047
Target:  5'- gGCCgggGGCguCGCCGGCCccgcGgACGACGGCg -3'
miRNA:   3'- -CGGa--UUG--GUGGUCGGu---UgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 5469 0.76 0.600929
Target:  5'- gGCC-AGCaggGCCAGCUggcgcgggGACACGGCGGCg -3'
miRNA:   3'- -CGGaUUGg--UGGUCGG--------UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 5512 0.74 0.694794
Target:  5'- cGCCgggcGCCGCgCAGCaggGACACGGCGGg -3'
miRNA:   3'- -CGGau--UGGUG-GUCGg--UUGUGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 5907 0.69 0.93287
Target:  5'- cGCCggcgggcggAGCCGCCGcgacGCCGccccggaGCGCGGgGGCg -3'
miRNA:   3'- -CGGa--------UUGGUGGU----CGGU-------UGUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 6454 0.66 0.984253
Target:  5'- cGCCgggacGACCGCgGGCCcGgGgAGCGGg -3'
miRNA:   3'- -CGGa----UUGGUGgUCGGuUgUgUUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.