miRNA display CGI

Results 61 - 80 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	7578	0.73	0.774668
	Target:  5'- cGCCc--CCACC-GCCGGCAUAAagcCGGCg -3' miRNA:   3'- -CGGauuGGUGGuCGGUUGUGUU---GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	7673	0.7	0.904588
	Target:  5'- cGCCccGACCACCGucgucGCCGACGCcgcCGGa -3' miRNA:   3'- -CGGa-UUGGUGGU-----CGGUUGUGuu-GCCg -5'
21702	3'	-52.4	NC_004812.1	+	7814	0.66	0.984253
	Target:  5'- aGCCU-ACCugUcucGGCgGGCGucuCGGCGGCu -3' miRNA:   3'- -CGGAuUGGugG---UCGgUUGU---GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	8034	0.68	0.955976
	Target:  5'- gGCC-GGCCuCC-GCCGGCACccccCGGCg -3' miRNA:   3'- -CGGaUUGGuGGuCGGUUGUGuu--GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	8281	0.68	0.94033
	Target:  5'- gGCCgacgAAUCgaaaguaaaaagcagGCCAGCgAGCGCAGCaGCg -3' miRNA:   3'- -CGGa---UUGG---------------UGGUCGgUUGUGUUGcCG- -5'
21702	3'	-52.4	NC_004812.1	+	8327	0.67	0.972692
	Target:  5'- gGCCggcGCCGCC-GCC-GCGCugccgggcGCGGCc -3' miRNA:   3'- -CGGau-UGGUGGuCGGuUGUGu-------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	8370	0.67	0.966672
	Target:  5'- cGUCggcGGCCGCCggGGCCcgggguccgggGGCGCGGCGGg -3' miRNA:   3'- -CGGa--UUGGUGG--UCGG-----------UUGUGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	8378	0.68	0.947673
	Target:  5'- cCCUGcuccccCCGCCGGCCAcccaAGCGGCc -3' miRNA:   3'- cGGAUu-----GGUGGUCGGUugugUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	8438	0.7	0.891343
	Target:  5'- cGCCgcccCCGCCcGCCGgaGCGCu-CGGCg -3' miRNA:   3'- -CGGauu-GGUGGuCGGU--UGUGuuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	8499	0.66	0.986032
	Target:  5'- gGCCggcGGCCGCCcgAGCCGGCugccuuuUAucccggucgccGCGGCg -3' miRNA:   3'- -CGGa--UUGGUGG--UCGGUUGu------GU-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	9060	0.66	0.980408
	Target:  5'- cGCCggcacccggaacccGCCGCCcGUCcAgGCGGCGGCg -3' miRNA:   3'- -CGGau------------UGGUGGuCGGuUgUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	9109	0.73	0.755303
	Target:  5'- cGCCUcggGGCCACCGGaCCcccgcGGCGCcACGGUc -3' miRNA:   3'- -CGGA---UUGGUGGUC-GG-----UUGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	9337	0.71	0.846055
	Target:  5'- cGCC-AACCGagaguccgccauCUGGCCGuggcGCACGGCGGCc -3' miRNA:   3'- -CGGaUUGGU------------GGUCGGU----UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	9387	0.66	0.977884
	Target:  5'- gGCCacGCCcuauuuCCGGCCAACgcccuggaaacgACAACGcGCu -3' miRNA:   3'- -CGGauUGGu-----GGUCGGUUG------------UGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	9407	0.72	0.811723
	Target:  5'- cGCCUAcagacCCACCAGCacauGCACGACcuGCu -3' miRNA:   3'- -CGGAUu----GGUGGUCGgu--UGUGUUGc-CG- -5'
21702	3'	-52.4	NC_004812.1	+	9497	0.68	0.947673
	Target:  5'- gGCCUGuacuCCACCcacuGCCGccaccuguuucGCGCGuuCGGCu -3' miRNA:   3'- -CGGAUu---GGUGGu---CGGU-----------UGUGUu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	9754	0.7	0.904588
	Target:  5'- aCC--GCCACCAgGCCcgcGGCGCGcCGGCg -3' miRNA:   3'- cGGauUGGUGGU-CGG---UUGUGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	9861	0.69	0.928124
	Target:  5'- cGCCgaccguCCGCCcGCCuugGACugGACGGg -3' miRNA:   3'- -CGGauu---GGUGGuCGG---UUGugUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	10095	0.7	0.904588
	Target:  5'- cCCUAucACCAgcCCGGCCAGgccCACGGCcuGGCg -3' miRNA:   3'- cGGAU--UGGU--GGUCGGUU---GUGUUG--CCG- -5'
21702	3'	-52.4	NC_004812.1	+	10305	0.66	0.980188
	Target:  5'- cGCCUGAgCGCCGucugcuGCCGucccauccGCACcagaaaaucGGCGGCc -3' miRNA:   3'- -CGGAUUgGUGGU------CGGU--------UGUG---------UUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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