miRNA display CGI


Results 81 - 100 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 11059 0.7 0.891343
Target:  5'- cGCCcGACC-CCGGgaCCAGCGCGAaccggGGCg -3'
miRNA:   3'- -CGGaUUGGuGGUC--GGUUGUGUUg----CCG- -5'
21702 3' -52.4 NC_004812.1 + 11193 0.7 0.88365
Target:  5'- cGCCUuuuAACgGCCcGCCAcgcccgcGCGCGcCGGCa -3'
miRNA:   3'- -CGGA---UUGgUGGuCGGU-------UGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 11254 0.68 0.951945
Target:  5'- gGCCggcAACgGCCAGCCc-CACGGCcGCc -3'
miRNA:   3'- -CGGa--UUGgUGGUCGGuuGUGUUGcCG- -5'
21702 3' -52.4 NC_004812.1 + 11570 0.68 0.957523
Target:  5'- cGCC--GCCGCCcccGCCuccgcgcucgccgggGACACGGCGGg -3'
miRNA:   3'- -CGGauUGGUGGu--CGG---------------UUGUGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 12222 0.68 0.949411
Target:  5'- aCCacGCCGCCAG-CAGCACGGgcucgcugacgcacuCGGCg -3'
miRNA:   3'- cGGauUGGUGGUCgGUUGUGUU---------------GCCG- -5'
21702 3' -52.4 NC_004812.1 + 12375 0.67 0.969789
Target:  5'- cGCCcGGCCGCgCGGCCGGgAgGGCGa- -3'
miRNA:   3'- -CGGaUUGGUG-GUCGGUUgUgUUGCcg -5'
21702 3' -52.4 NC_004812.1 + 13023 0.67 0.959772
Target:  5'- gGCCUGAUCGCCGGggguCGCGGggcCGGCc -3'
miRNA:   3'- -CGGAUUGGUGGUCgguuGUGUU---GCCG- -5'
21702 3' -52.4 NC_004812.1 + 13289 0.71 0.846055
Target:  5'- aGCCgaa-CACCAGCUuGCGCAGCcuGGUg -3'
miRNA:   3'- -CGGauugGUGGUCGGuUGUGUUG--CCG- -5'
21702 3' -52.4 NC_004812.1 + 13362 0.66 0.975388
Target:  5'- cGCC--ACCACCAGCUGcugcuugcuguGCACcucgaGGCg -3'
miRNA:   3'- -CGGauUGGUGGUCGGU-----------UGUGuug--CCG- -5'
21702 3' -52.4 NC_004812.1 + 13980 0.66 0.980188
Target:  5'- gGCCccGGCgGCCAGgagcgaguCCGACACGA-GGCu -3'
miRNA:   3'- -CGGa-UUGgUGGUC--------GGUUGUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 14018 0.71 0.837758
Target:  5'- gGUCau-CCACCAGCaguACACcACGGCc -3'
miRNA:   3'- -CGGauuGGUGGUCGgu-UGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14119 0.68 0.951945
Target:  5'- cGCCgugcgugaacGCCGCCAGCCG-CGuCAG-GGCg -3'
miRNA:   3'- -CGGau--------UGGUGGUCGGUuGU-GUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 14219 0.66 0.975388
Target:  5'- gGCCccGCCcCCGGCgGcCACGGCGcGCc -3'
miRNA:   3'- -CGGauUGGuGGUCGgUuGUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 14351 0.76 0.600929
Target:  5'- aGCCgcacguGCuUGCCGGCCGcgcggGCGCGGCGGCg -3'
miRNA:   3'- -CGGau----UG-GUGGUCGGU-----UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14422 0.78 0.489167
Target:  5'- gGCC-AGCCccgcGCCGGCCAGCGCGccaacgAUGGCg -3'
miRNA:   3'- -CGGaUUGG----UGGUCGGUUGUGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14509 0.66 0.975388
Target:  5'- gGCCU--CCggaACguGCCAGUugGGCGGCa -3'
miRNA:   3'- -CGGAuuGG---UGguCGGUUGugUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14611 0.7 0.891343
Target:  5'- cCCggAACCACugCAGCCGGgGCAcccgcGCGGCc -3'
miRNA:   3'- cGGa-UUGGUG--GUCGGUUgUGU-----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14649 0.67 0.972692
Target:  5'- aGCCggugcuCCGCCAGCUcccgGACGCGuucgaugauUGGCu -3'
miRNA:   3'- -CGGauu---GGUGGUCGG----UUGUGUu--------GCCG- -5'
21702 3' -52.4 NC_004812.1 + 14676 0.68 0.951945
Target:  5'- gGCCguGCCACCccgcGGCCuGCAggcuguaGACGGCc -3'
miRNA:   3'- -CGGauUGGUGG----UCGGuUGUg------UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14791 0.66 0.977884
Target:  5'- cGCCgacCCGC--GCCAugGCcgAGCGGCa -3'
miRNA:   3'- -CGGauuGGUGguCGGUugUG--UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.