miRNA display CGI

Results 101 - 120 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	14845	0.69	0.928124
	Target:  5'- gGCCguucgacGCCGCCccgcGGCCGcCcgACGACGGCu -3' miRNA:   3'- -CGGau-----UGGUGG----UCGGUuG--UGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	14992	0.68	0.947673
	Target:  5'- aGCCgUGAcCCGCCAGCUGcAgGCcGCGGUc -3' miRNA:   3'- -CGG-AUU-GGUGGUCGGU-UgUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15102	0.75	0.663667
	Target:  5'- aGCCcGAgCGCCuggugcGCCggUACGGCGGCg -3' miRNA:   3'- -CGGaUUgGUGGu-----CGGuuGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15169	0.67	0.963679
	Target:  5'- aCCUGgACCGCCuccGUCGGCGCccagaggaggacgcuGCGGCa -3' miRNA:   3'- cGGAU-UGGUGGu--CGGUUGUGu--------------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15224	0.71	0.837758
	Target:  5'- gGCCUGGCCgACUgcuucgcgcagGGCgGACcCGGCGGCc -3' miRNA:   3'- -CGGAUUGG-UGG-----------UCGgUUGuGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15433	0.72	0.820584
	Target:  5'- aGCgcAACCGCCAGCgaCAGCAgAaccGCGGCg -3' miRNA:   3'- -CGgaUUGGUGGUCG--GUUGUgU---UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15531	0.68	0.947673
	Target:  5'- uGCgUGACC-CC-GCCGGCGCGcagcGCGGa -3' miRNA:   3'- -CGgAUUGGuGGuCGGUUGUGU----UGCCg -5'
21702	3'	-52.4	NC_004812.1	+	15738	0.67	0.972692
	Target:  5'- cGCCac-CCACCcccgcGCCuuGCGCGccuGCGGCa -3' miRNA:   3'- -CGGauuGGUGGu----CGGu-UGUGU---UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15793	0.68	0.947673
	Target:  5'- cGCCUcgaaGGCCGgcUCGGCCGccucGCGCcucguGCGGCu -3' miRNA:   3'- -CGGA----UUGGU--GGUCGGU----UGUGu----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15948	0.66	0.982104
	Target:  5'- uGCCgGGCUucgGCCGGgCGACGgacgccccgcggcCGGCGGCg -3' miRNA:   3'- -CGGaUUGG---UGGUCgGUUGU-------------GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15965	0.69	0.910845
	Target:  5'- cGCgUGGC-GCC-GCC-GCGCGGCGGCg -3' miRNA:   3'- -CGgAUUGgUGGuCGGuUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16024	0.69	0.919188
	Target:  5'- cGCCaGGCCuuCCAGaccucggucgucaaCAACAuCAACGGCa -3' miRNA:   3'- -CGGaUUGGu-GGUCg-------------GUUGU-GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16153	0.66	0.982308
	Target:  5'- ---cGGCCguGCCGGCUAcgguCGCGGCGGUg -3' miRNA:   3'- cggaUUGG--UGGUCGGUu---GUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16187	0.75	0.674082
	Target:  5'- cGCUcGAUCGCCAG-CAGCGCG-CGGCg -3' miRNA:   3'- -CGGaUUGGUGGUCgGUUGUGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16226	0.67	0.966672
	Target:  5'- cGCCggaggcggAGCCgGCCGGCCAGgACGAccucCGGa -3' miRNA:   3'- -CGGa-------UUGG-UGGUCGGUUgUGUU----GCCg -5'
21702	3'	-52.4	NC_004812.1	+	16265	0.66	0.981058
	Target:  5'- cGCCgcgGCCACCcacgcGCCGACgACGaacagaagagaccgcAUGGCg -3' miRNA:   3'- -CGGau-UGGUGGu----CGGUUG-UGU---------------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16487	0.77	0.528906
	Target:  5'- cGCCcccguguccGCCACCGGCCGggggGCGCGGgGGCg -3' miRNA:   3'- -CGGau-------UGGUGGUCGGU----UGUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16641	0.69	0.916854
	Target:  5'- cGCCgacguCCGCCAcGCCGcGCGCuccCGGCc -3' miRNA:   3'- -CGGauu--GGUGGU-CGGU-UGUGuu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16756	0.72	0.784155
	Target:  5'- cGCCccgggGGCCGCgGGCCcgaaGACGCGugggGCGGCc -3' miRNA:   3'- -CGGa----UUGGUGgUCGG----UUGUGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	16802	0.67	0.966672
	Target:  5'- aCCaUGGCCACCucgacccccGCCGAgGaggaGACGGCg -3' miRNA:   3'- cGG-AUUGGUGGu--------CGGUUgUg---UUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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