miRNA display CGI

Results 41 - 60 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	152577	0.66	0.980188
	Target:  5'- gGCCgccGCCGCC-GCCGAgUGCcucACGGCc -3' miRNA:   3'- -CGGau-UGGUGGuCGGUU-GUGu--UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152545	0.68	0.957523
	Target:  5'- gGCCggcggaggaggagcGGCCugCGGCgGAgGCGgaGCGGCg -3' miRNA:   3'- -CGGa-------------UUGGugGUCGgUUgUGU--UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152473	0.67	0.969487
	Target:  5'- cGCCUGgcgGCCGCCcucuccgacgagGGCCccgccGGCGCcggggagGACGGCc -3' miRNA:   3'- -CGGAU---UGGUGG------------UCGG-----UUGUG-------UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152424	0.67	0.969789
	Target:  5'- cGCCguucCCGCCGGguaCGGCGCcGCGGg -3' miRNA:   3'- -CGGauu-GGUGGUCg--GUUGUGuUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	152385	0.68	0.947673
	Target:  5'- cGCCgccGCCGCCcccgAGcCCGACGCcgccGCGGUc -3' miRNA:   3'- -CGGau-UGGUGG----UC-GGUUGUGu---UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152306	0.7	0.869702
	Target:  5'- uCCUcAUCACCAGCCu--GCGGCGcGCg -3' miRNA:   3'- cGGAuUGGUGGUCGGuugUGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	152262	0.66	0.975127
	Target:  5'- cGCCgucGCCAUgAGCCGccgcuacgaccgcGCGCAGaagGGCu -3' miRNA:   3'- -CGGau-UGGUGgUCGGU-------------UGUGUUg--CCG- -5'
21702	3'	-52.4	NC_004812.1	+	152217	0.7	0.877146
	Target:  5'- gGCggGACCAcCCGGgCGACGCcuCGGCc -3' miRNA:   3'- -CGgaUUGGU-GGUCgGUUGUGuuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152214	0.76	0.59051
	Target:  5'- cGCCaUGGCCGCCGGCCGcuucgGCugGGgccUGGCg -3' miRNA:   3'- -CGG-AUUGGUGGUCGGU-----UGugUU---GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151961	0.66	0.977884
	Target:  5'- gGCgCUAcgagGCCGCCGGCgCGcccGCGCccguGugGGCg -3' miRNA:   3'- -CG-GAU----UGGUGGUCG-GU---UGUG----UugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151937	0.72	0.811723
	Target:  5'- cCCUcGgCGCCGGC--GCGCGACGGCc -3' miRNA:   3'- cGGAuUgGUGGUCGguUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151866	0.71	0.829264
	Target:  5'- cGCCgAGCCGCC-GCCcccggGGCGCGugcucuACGGCg -3' miRNA:   3'- -CGGaUUGGUGGuCGG-----UUGUGU------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151812	0.68	0.951945
	Target:  5'- cGCCUucuaCGCCcGCUAcCGCGACGGg -3' miRNA:   3'- -CGGAuug-GUGGuCGGUuGUGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	151734	0.66	0.984253
	Target:  5'- gGCCgggcgcgacGCCACgGGCCGcuuCACGGCcGCg -3' miRNA:   3'- -CGGau-------UGGUGgUCGGUu--GUGUUGcCG- -5'
21702	3'	-52.4	NC_004812.1	+	151677	0.69	0.933385
	Target:  5'- cGCCcuccagcGCCGCCucccgGGCCGcaGCgaGCGGCGGCg -3' miRNA:   3'- -CGGau-----UGGUGG-----UCGGU--UG--UGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151648	0.72	0.784155
	Target:  5'- cGCCUcgccGCCGCCGGCCGcC-CGcCGGCc -3' miRNA:   3'- -CGGAu---UGGUGGUCGGUuGuGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151608	0.68	0.955976
	Target:  5'- uGCCgcccCCGCCcGCCcugcGGCGC-ACGGCc -3' miRNA:   3'- -CGGauu-GGUGGuCGG----UUGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151460	0.81	0.362996
	Target:  5'- gGCCcgGACCGCgGGCCGACGCcgccguccccgGGCGGCc -3' miRNA:   3'- -CGGa-UUGGUGgUCGGUUGUG-----------UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151376	0.7	0.898086
	Target:  5'- cGCCccgacGGCCGCgaGGCCGACGCcggcuCGGCc -3' miRNA:   3'- -CGGa----UUGGUGg-UCGGUUGUGuu---GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151324	0.68	0.938395
	Target:  5'- cGCCgaggucGCCGagUCGGCCGAgcgcggggcCGCGGCGGCc -3' miRNA:   3'- -CGGau----UGGU--GGUCGGUU---------GUGUUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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