miRNA display CGI

Results 61 - 80 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	151278	0.7	0.877146
	Target:  5'- cGCC-GACC-CCGGgCGGCGCccCGGCg -3' miRNA:   3'- -CGGaUUGGuGGUCgGUUGUGuuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151123	0.66	0.980188
	Target:  5'- cGCCgccGCCGCCGuguccccgcGCCAGCugGcccuGCuGGCc -3' miRNA:   3'- -CGGau-UGGUGGU---------CGGUUGugU----UG-CCG- -5'
21702	3'	-52.4	NC_004812.1	+	150772	0.66	0.980188
	Target:  5'- cGCCUcccgagcgcGCCGCCGGCCcGCAgAGCccgccGCg -3' miRNA:   3'- -CGGAu--------UGGUGGUCGGuUGUgUUGc----CG- -5'
21702	3'	-52.4	NC_004812.1	+	150667	0.72	0.784155
	Target:  5'- gGCggAGCCGCCGGUCGcccccGCGCuccgGGCGGCg -3' miRNA:   3'- -CGgaUUGGUGGUCGGU-----UGUG----UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	150557	0.69	0.916264
	Target:  5'- cGCCUGcgcggugucgauaGCCGCgCGGCggcgggcuccuCGACGgGGCGGCg -3' miRNA:   3'- -CGGAU-------------UGGUG-GUCG-----------GUUGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	150361	0.68	0.936918
	Target:  5'- cCCcGACCGCgGGCgCGAgacggccgcggggcCGCGGCGGCa -3' miRNA:   3'- cGGaUUGGUGgUCG-GUU--------------GUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	149789	0.68	0.943157
	Target:  5'- cGCCgccccCCAcCCAGCCccaGACGCc-CGGCg -3' miRNA:   3'- -CGGauu--GGU-GGUCGG---UUGUGuuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	149754	0.72	0.784155
	Target:  5'- cGCCcccggcgGGCCGCCucGCCGAcCGCGAgGGCc -3' miRNA:   3'- -CGGa------UUGGUGGu-CGGUU-GUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	149687	0.67	0.972692
	Target:  5'- cCCccACC-CCGGCCcgcgGGCGCAGCGcGCc -3' miRNA:   3'- cGGauUGGuGGUCGG----UUGUGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	149007	0.68	0.951945
	Target:  5'- ----uGCgGCgGGCCgGGCGCGGCGGCg -3' miRNA:   3'- cggauUGgUGgUCGG-UUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	148978	0.74	0.725427
	Target:  5'- cGCCccGACC-CCGGCCGccGCGCGucucCGGCg -3' miRNA:   3'- -CGGa-UUGGuGGUCGGU--UGUGUu---GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	148829	0.73	0.765047
	Target:  5'- gGCCUAcACgGCCGcGCCG-CACGGCGcGCa -3' miRNA:   3'- -CGGAU-UGgUGGU-CGGUuGUGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	148429	0.68	0.938395
	Target:  5'- gGCCgGACC-CCGGCCcgGACcCAugGGg -3' miRNA:   3'- -CGGaUUGGuGGUCGG--UUGuGUugCCg -5'
21702	3'	-52.4	NC_004812.1	+	148384	0.72	0.7935
	Target:  5'- gGCCcGGCCGCCGGgcgcguCCGACGCGGgccccCGGCc -3' miRNA:   3'- -CGGaUUGGUGGUC------GGUUGUGUU-----GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	148245	0.72	0.792572
	Target:  5'- gGCCccggcGGCCGCCgacgcgguggggcGGCCGcgcccggcaGCGCGGCGGCg -3' miRNA:   3'- -CGGa----UUGGUGG-------------UCGGU---------UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	148167	0.67	0.963335
	Target:  5'- cGCCgAGCgCuCCGGCgGGCggggGCGGCGGCc -3' miRNA:   3'- -CGGaUUG-GuGGUCGgUUG----UGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	147691	0.66	0.982308
	Target:  5'- uCCUGGCaACCGGCCcaaGCAG-GGCa -3' miRNA:   3'- cGGAUUGgUGGUCGGuugUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	147629	0.72	0.820584
	Target:  5'- cGCCUcuGCgCGCCAGUgGGCGCGACGa- -3' miRNA:   3'- -CGGAu-UG-GUGGUCGgUUGUGUUGCcg -5'
21702	3'	-52.4	NC_004812.1	+	147395	0.7	0.891343
	Target:  5'- gGCCUcguAUCGCCAGgUGACGCcacCGGCg -3' miRNA:   3'- -CGGAu--UGGUGGUCgGUUGUGuu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	147083	0.67	0.969789
	Target:  5'- gGCCU--CCG-CAGCCgAACGCGcgaaacaggugGCGGCa -3' miRNA:   3'- -CGGAuuGGUgGUCGG-UUGUGU-----------UGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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