miRNA display CGI


Results 81 - 100 of 1131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 146710 0.71 0.846055
Target:  5'- cGCCUcGCCgACCAGaaa--GCGGCGGCg -3'
miRNA:   3'- -CGGAuUGG-UGGUCgguugUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 146236 0.71 0.837758
Target:  5'- cGCCccagAGCauaaaaACCAGCCcggGGCGCGacGCGGCg -3'
miRNA:   3'- -CGGa---UUGg-----UGGUCGG---UUGUGU--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 146041 0.67 0.969789
Target:  5'- uGCCcccggcACCGCUcGCCGGCACGcagaACGcGCg -3'
miRNA:   3'- -CGGau----UGGUGGuCGGUUGUGU----UGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 145703 0.68 0.955976
Target:  5'- cCCcGACCGCCAcaCCGGCGCuGACGGa -3'
miRNA:   3'- cGGaUUGGUGGUc-GGUUGUG-UUGCCg -5'
21702 3' -52.4 NC_004812.1 + 145458 0.66 0.975388
Target:  5'- aCCUAcauUCGCCuGGCCGACgACGagcucuACGGCg -3'
miRNA:   3'- cGGAUu--GGUGG-UCGGUUG-UGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 145391 0.71 0.829264
Target:  5'- gGCCUGcguCACCuGCCGGCGCGcGCGGg -3'
miRNA:   3'- -CGGAUug-GUGGuCGGUUGUGU-UGCCg -5'
21702 3' -52.4 NC_004812.1 + 145289 0.74 0.725427
Target:  5'- gGCCcAGcCCACCGGCCccCGCcccGCGGCg -3'
miRNA:   3'- -CGGaUU-GGUGGUCGGuuGUGu--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 145103 0.69 0.916854
Target:  5'- cGUC-AACCugCAGCUgcgcGACGCGucggaggcgaGCGGCg -3'
miRNA:   3'- -CGGaUUGGugGUCGG----UUGUGU----------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 145025 0.7 0.869702
Target:  5'- cGCCguguCC-CCGGCgAGCGCGgaggcggggGCGGCg -3'
miRNA:   3'- -CGGauu-GGuGGUCGgUUGUGU---------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 144945 0.71 0.846055
Target:  5'- uGCCgc-UCGCCGGCgGACGCcccgugcGCGGCg -3'
miRNA:   3'- -CGGauuGGUGGUCGgUUGUGu------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 144555 0.72 0.820584
Target:  5'- gGUgUu-CCACCcccCCAACGCGACGGCg -3'
miRNA:   3'- -CGgAuuGGUGGuc-GGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 144389 0.71 0.828405
Target:  5'- aGCCcguGCUGCUGGCggcgugguacgagCGGCGCGACGGCg -3'
miRNA:   3'- -CGGau-UGGUGGUCG-------------GUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 143789 0.72 0.811723
Target:  5'- aGCCagaGACCACCgcGGCCGuccacGCGCAGuuCGGCc -3'
miRNA:   3'- -CGGa--UUGGUGG--UCGGU-----UGUGUU--GCCG- -5'
21702 3' -52.4 NC_004812.1 + 143519 0.66 0.983878
Target:  5'- cGCCgucGGCCGCCucgagcauuuccGCCGugAacgaGGCGGCc -3'
miRNA:   3'- -CGGa--UUGGUGGu-----------CGGUugUg---UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 143484 0.7 0.904588
Target:  5'- uCCUGcuccGCC-CCGGCCugGACGCGGCgaGGCg -3'
miRNA:   3'- cGGAU----UGGuGGUCGG--UUGUGUUG--CCG- -5'
21702 3' -52.4 NC_004812.1 + 143300 0.7 0.869702
Target:  5'- aGCCagaucgcggUGACCACCAGgCuGCGCAAgcugguguuCGGCu -3'
miRNA:   3'- -CGG---------AUUGGUGGUCgGuUGUGUU---------GCCG- -5'
21702 3' -52.4 NC_004812.1 + 143289 0.68 0.955976
Target:  5'- cGCCgcACCcCCGacccCCGGCGCGGCGGa -3'
miRNA:   3'- -CGGauUGGuGGUc---GGUUGUGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 143131 0.67 0.972692
Target:  5'- -gCUGAcCCACCAGCCcGCGCuGACcGUg -3'
miRNA:   3'- cgGAUU-GGUGGUCGGuUGUG-UUGcCG- -5'
21702 3' -52.4 NC_004812.1 + 142638 0.74 0.684461
Target:  5'- uCCUGGCCGCCggGGCCGucgGgGCgAACGGCu -3'
miRNA:   3'- cGGAUUGGUGG--UCGGU---UgUG-UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 142391 0.69 0.928125
Target:  5'- cGCCgUGGCCGCCgggggcggGGCCGAg--GACGGCc -3'
miRNA:   3'- -CGG-AUUGGUGG--------UCGGUUgugUUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.