Results 41 - 60 of 1131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21702 | 3' | -52.4 | NC_004812.1 | + | 111759 | 0.83 | 0.274224 |
Target: 5'- uCCUGuACCACCGGCCcGCAUcggGACGGCg -3' miRNA: 3'- cGGAU-UGGUGGUCGGuUGUG---UUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 107424 | 0.84 | 0.242706 |
Target: 5'- gGCCaGGcCCACCGGCC-GCGCGGCGGCc -3' miRNA: 3'- -CGGaUU-GGUGGUCGGuUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 64031 | 0.85 | 0.208929 |
Target: 5'- cGCC--GCCGCCAGCCAgGCgACGACGGCc -3' miRNA: 3'- -CGGauUGGUGGUCGGU-UG-UGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 129459 | 0.85 | 0.20371 |
Target: 5'- cGCgcGGCCGCCAGCCcgGGCACGGCGGCc -3' miRNA: 3'- -CGgaUUGGUGGUCGG--UUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 46895 | 0.87 | 0.149468 |
Target: 5'- cGCCUGcCCAgCCGGCCGccaGCGCGGCGGCg -3' miRNA: 3'- -CGGAUuGGU-GGUCGGU---UGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 69572 | 0.79 | 0.431451 |
Target: 5'- gGCCgcGCCG-CAGCCGccuccgaGCGCGACGGCg -3' miRNA: 3'- -CGGauUGGUgGUCGGU-------UGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 152946 | 0.79 | 0.440643 |
Target: 5'- aGCCUGcGCCcccuGCUGGCCGACGCAgacgcggGCGGCg -3' miRNA: 3'- -CGGAU-UGG----UGGUCGGUUGUGU-------UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 362 | 0.77 | 0.558444 |
Target: 5'- cCCUcacucucGGCCGCC-GCCGGCGCAucccGCGGCg -3' miRNA: 3'- cGGA-------UUGGUGGuCGGUUGUGU----UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 48317 | 0.77 | 0.549222 |
Target: 5'- gGCCgacGCCGC-GGCCGAggcCGCAACGGCg -3' miRNA: 3'- -CGGau-UGGUGgUCGGUU---GUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 122917 | 0.77 | 0.5482 |
Target: 5'- aGCCguUGGCCugCAcGCCcacgaugagauagGACACGGCGGCg -3' miRNA: 3'- -CGG--AUUGGugGU-CGG-------------UUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 129892 | 0.77 | 0.518851 |
Target: 5'- cGCCaGGCC-CCAGCCGAaGCGGcCGGCg -3' miRNA: 3'- -CGGaUUGGuGGUCGGUUgUGUU-GCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 51435 | 0.77 | 0.518851 |
Target: 5'- cGCCccGCCACCAGCCGcACGCGACccccGCc -3' miRNA: 3'- -CGGauUGGUGGUCGGU-UGUGUUGc---CG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 129496 | 0.78 | 0.508873 |
Target: 5'- cGCCgUAGCCcUCGGCCAGCGCcuccagcACGGCg -3' miRNA: 3'- -CGG-AUUGGuGGUCGGUUGUGu------UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 56893 | 0.78 | 0.498977 |
Target: 5'- gGCCUGugCgGCCAGCCcugGGCGCAggcgccgccgcACGGCg -3' miRNA: 3'- -CGGAUugG-UGGUCGG---UUGUGU-----------UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 139164 | 0.78 | 0.489167 |
Target: 5'- cGCCacccCCACC-GCCAACGgGACGGCc -3' miRNA: 3'- -CGGauu-GGUGGuCGGUUGUgUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 94310 | 0.78 | 0.469826 |
Target: 5'- cGCUUggUCGCCGGCU-GCGCGGCGGUg -3' miRNA: 3'- -CGGAuuGGUGGUCGGuUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 129253 | 0.79 | 0.460302 |
Target: 5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3' miRNA: 3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 35062 | 0.79 | 0.450882 |
Target: 5'- uGCCgcgcGCCACCAGCCG-CGCGACGa- -3' miRNA: 3'- -CGGau--UGGUGGUCGGUuGUGUUGCcg -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 127728 | 0.79 | 0.441569 |
Target: 5'- cGCCgcgGCC-CgCGGCCAGCGCAcgcGCGGCg -3' miRNA: 3'- -CGGau-UGGuG-GUCGGUUGUGU---UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 126948 | 0.79 | 0.441569 |
Target: 5'- gGCCggGGCCGCgagGGCCgGGCACGGCGGCg -3' miRNA: 3'- -CGGa-UUGGUGg--UCGG-UUGUGUUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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