miRNA display CGI


Results 81 - 100 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 113280 0.75 0.621832
Target:  5'- cGCCguggcgAugCACCAGCCcuu-CGGCGGCa -3'
miRNA:   3'- -CGGa-----UugGUGGUCGGuuguGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 142238 0.75 0.621832
Target:  5'- aCCUGgugcGCCGCCGcGCCcGCGCGGcCGGCa -3'
miRNA:   3'- cGGAU----UGGUGGU-CGGuUGUGUU-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 100927 0.75 0.632299
Target:  5'- cGCCcaccGCCACCgacAGCC-ACugGACGGCc -3'
miRNA:   3'- -CGGau--UGGUGG---UCGGuUGugUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 75781 0.75 0.632299
Target:  5'- cGCCgaacgcgGGCCcCCAGUCGAUGCGGCGGg -3'
miRNA:   3'- -CGGa------UUGGuGGUCGGUUGUGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 77154 0.75 0.632299
Target:  5'- cGUCUcGGCCGgCAGCCcgccCGCGGCGGCg -3'
miRNA:   3'- -CGGA-UUGGUgGUCGGuu--GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 100609 0.75 0.632299
Target:  5'- cGCUggagAACgagggCGCCGGCCAggaucgcgcGCACGGCGGCg -3'
miRNA:   3'- -CGGa---UUG-----GUGGUCGGU---------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 129658 0.75 0.632299
Target:  5'- ---cGGCCGCCAGgCGGCGCugcGCGGCg -3'
miRNA:   3'- cggaUUGGUGGUCgGUUGUGu--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 72514 0.76 0.611372
Target:  5'- cGCC--GCCGCCgggguccgGGCCGGCGCccGCGGCg -3'
miRNA:   3'- -CGGauUGGUGG--------UCGGUUGUGu-UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 19044 0.76 0.600929
Target:  5'- aGCCUcucGGCCGCggCGGCCGAgACcGCGGCc -3'
miRNA:   3'- -CGGA---UUGGUG--GUCGGUUgUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 130977 0.76 0.600929
Target:  5'- gGCC-AGCaggGCCAGCUggcgcgggGACACGGCGGCg -3'
miRNA:   3'- -CGGaUUGg--UGGUCGG--------UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 48317 0.77 0.549222
Target:  5'- gGCCgacGCCGC-GGCCGAggcCGCAACGGCg -3'
miRNA:   3'- -CGGau-UGGUGgUCGGUU---GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 362 0.77 0.558444
Target:  5'- cCCUcacucucGGCCGCC-GCCGGCGCAucccGCGGCg -3'
miRNA:   3'- cGGA-------UUGGUGGuCGGUUGUGU----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 82697 0.77 0.559472
Target:  5'- cGCCgcUGGgCGCCGGCCGACG--GCGGCu -3'
miRNA:   3'- -CGG--AUUgGUGGUCGGUUGUguUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 16891 0.76 0.568742
Target:  5'- gGCCgagGCCAUCAGCCAccaggcgcugcuGCGCAuggccugcgagguGCGGCa -3'
miRNA:   3'- -CGGau-UGGUGGUCGGU------------UGUGU-------------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 51505 0.76 0.580123
Target:  5'- cGCuUUGGCCGCgCAGggucccgcccCCGGCGCAGCGGCg -3'
miRNA:   3'- -CG-GAUUGGUG-GUC----------GGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 128207 0.76 0.59051
Target:  5'- cGCCgGGCCcgaagacgcgGCCggaGGCCAGCACGgcGCGGCg -3'
miRNA:   3'- -CGGaUUGG----------UGG---UCGGUUGUGU--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 152214 0.76 0.59051
Target:  5'- cGCCaUGGCCGCCGGCCGcuucgGCugGGgccUGGCg -3'
miRNA:   3'- -CGG-AUUGGUGGUCGGU-----UGugUU---GCCG- -5'
21702 3' -52.4 NC_004812.1 + 97855 0.76 0.59051
Target:  5'- cGCCgggcGCCGCCGGCCGGguccuuCAAUGGCu -3'
miRNA:   3'- -CGGau--UGGUGGUCGGUUgu----GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 52430 0.76 0.5978
Target:  5'- gGCC--GCCGCCAGCCcggccaggaccagcAGCcCGACGGCc -3'
miRNA:   3'- -CGGauUGGUGGUCGG--------------UUGuGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 97113 0.75 0.632299
Target:  5'- cGCCgggGGCCGC--GCCGcCGCGGCGGCg -3'
miRNA:   3'- -CGGa--UUGGUGguCGGUuGUGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.