Results 101 - 120 of 1131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21702 | 3' | -52.4 | NC_004812.1 | + | 152651 | 0.75 | 0.653226 |
Target: 5'- aCCUGGCCGCCGuGCCcGgGCuGGCGGCc -3' miRNA: 3'- cGGAUUGGUGGU-CGGuUgUG-UUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 23039 | 0.75 | 0.653226 |
Target: 5'- cGCCggcaggacGCCGCCgAGCuCGACGCcGCGGCc -3' miRNA: 3'- -CGGau------UGGUGG-UCG-GUUGUGuUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 34211 | 0.75 | 0.653226 |
Target: 5'- cGCCcgcAGCUAcuCCGGCaAGCGCAACGGCg -3' miRNA: 3'- -CGGa--UUGGU--GGUCGgUUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 47705 | 0.75 | 0.653226 |
Target: 5'- aCCcGACCcgggcgcCCGGCCGGCGCGagGCGGCg -3' miRNA: 3'- cGGaUUGGu------GGUCGGUUGUGU--UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 64809 | 0.75 | 0.663667 |
Target: 5'- gGCCUGACgGCCgagGGCCuGACGgcCAugGGCg -3' miRNA: 3'- -CGGAUUGgUGG---UCGG-UUGU--GUugCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 75781 | 0.75 | 0.632299 |
Target: 5'- cGCCgaacgcgGGCCcCCAGUCGAUGCGGCGGg -3' miRNA: 3'- -CGGa------UUGGuGGUCGGUUGUGUUGCCg -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 100927 | 0.75 | 0.632299 |
Target: 5'- cGCCcaccGCCACCgacAGCC-ACugGACGGCc -3' miRNA: 3'- -CGGau--UGGUGG---UCGGuUGugUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 51505 | 0.76 | 0.580123 |
Target: 5'- cGCuUUGGCCGCgCAGggucccgcccCCGGCGCAGCGGCg -3' miRNA: 3'- -CG-GAUUGGUG-GUC----------GGUUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 128207 | 0.76 | 0.59051 |
Target: 5'- cGCCgGGCCcgaagacgcgGCCggaGGCCAGCACGgcGCGGCg -3' miRNA: 3'- -CGGaUUGG----------UGG---UCGGUUGUGU--UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 152214 | 0.76 | 0.59051 |
Target: 5'- cGCCaUGGCCGCCGGCCGcuucgGCugGGgccUGGCg -3' miRNA: 3'- -CGG-AUUGGUGGUCGGU-----UGugUU---GCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 97855 | 0.76 | 0.59051 |
Target: 5'- cGCCgggcGCCGCCGGCCGGguccuuCAAUGGCu -3' miRNA: 3'- -CGGau--UGGUGGUCGGUUgu----GUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 52430 | 0.76 | 0.5978 |
Target: 5'- gGCC--GCCGCCAGCCcggccaggaccagcAGCcCGACGGCc -3' miRNA: 3'- -CGGauUGGUGGUCGG--------------UUGuGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 130977 | 0.76 | 0.600929 |
Target: 5'- gGCC-AGCaggGCCAGCUggcgcgggGACACGGCGGCg -3' miRNA: 3'- -CGGaUUGg--UGGUCGG--------UUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 19044 | 0.76 | 0.600929 |
Target: 5'- aGCCUcucGGCCGCggCGGCCGAgACcGCGGCc -3' miRNA: 3'- -CGGA---UUGGUG--GUCGGUUgUGuUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 72514 | 0.76 | 0.611372 |
Target: 5'- cGCC--GCCGCCgggguccgGGCCGGCGCccGCGGCg -3' miRNA: 3'- -CGGauUGGUGG--------UCGGUUGUGu-UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 90134 | 0.76 | 0.611372 |
Target: 5'- cGCC-GGCCAaCAGCCGcguccuggACGCGGCGGCc -3' miRNA: 3'- -CGGaUUGGUgGUCGGU--------UGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 135580 | 0.75 | 0.618693 |
Target: 5'- gGUCUcgcgcAGCCACCccaugcacccccgcGGCCGagGCGCGGCGGCg -3' miRNA: 3'- -CGGA-----UUGGUGG--------------UCGGU--UGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 95574 | 0.75 | 0.620785 |
Target: 5'- gGgCUAACCGCaCGGCCGcgcccgcGCGCGggcGCGGCa -3' miRNA: 3'- -CgGAUUGGUG-GUCGGU-------UGUGU---UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 113280 | 0.75 | 0.621832 |
Target: 5'- cGCCguggcgAugCACCAGCCcuu-CGGCGGCa -3' miRNA: 3'- -CGGa-----UugGUGGUCGGuuguGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 142238 | 0.75 | 0.621832 |
Target: 5'- aCCUGgugcGCCGCCGcGCCcGCGCGGcCGGCa -3' miRNA: 3'- cGGAU----UGGUGGU-CGGuUGUGUU-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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