miRNA display CGI


Results 21 - 40 of 1131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 41974 0.77 0.518851
Target:  5'- cGCUgAACgGCCGGCU-GCACAACGGCc -3'
miRNA:   3'- -CGGaUUGgUGGUCGGuUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14422 0.78 0.489167
Target:  5'- gGCC-AGCCccgcGCCGGCCAGCGCGccaacgAUGGCg -3'
miRNA:   3'- -CGGaUUGG----UGGUCGGUUGUGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 25951 0.81 0.362996
Target:  5'- gGCCcgGACCGCgGGCCGACGCcgccguccccgGGCGGCc -3'
miRNA:   3'- -CGGa-UUGGUGgUCGGUUGUG-----------UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 79854 0.82 0.294663
Target:  5'- gGCCcugGAgCACCcgacGGCCGACACGGCGGCc -3'
miRNA:   3'- -CGGa--UUgGUGG----UCGGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 48050 0.76 0.580123
Target:  5'- gGCgCgcGCCACCAGCgAGCGCAGCGa- -3'
miRNA:   3'- -CG-GauUGGUGGUCGgUUGUGUUGCcg -5'
21702 3' -52.4 NC_004812.1 + 153818 0.77 0.5482
Target:  5'- aGCCguUGGCCugCAcGCCcacgaugagauagGACACGGCGGCg -3'
miRNA:   3'- -CGG--AUUGGugGU-CGG-------------UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 79453 0.79 0.460302
Target:  5'- cGCCgcgggcgGGCUGCCGGCCGAgACG-CGGCg -3'
miRNA:   3'- -CGGa------UUGGUGGUCGGUUgUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 48926 0.82 0.293963
Target:  5'- cGCCUGgcccGCCACCAgcuuggcGCCGACGCGGCGaGCc -3'
miRNA:   3'- -CGGAU----UGGUGGU-------CGGUUGUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 107163 0.77 0.547179
Target:  5'- cGCCUGGCgggCACCGGacgacauguccaCGACGCGGCGGCc -3'
miRNA:   3'- -CGGAUUG---GUGGUCg-----------GUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 62059 0.84 0.230968
Target:  5'- aGCCccGCCACCAgggccGCCGACAgGGCGGCg -3'
miRNA:   3'- -CGGauUGGUGGU-----CGGUUGUgUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3745 0.79 0.460302
Target:  5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3'
miRNA:   3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 77447 0.77 0.527897
Target:  5'- aCCUGuCCGCCGGCCGACACcaccccaAGCGcGCc -3'
miRNA:   3'- cGGAUuGGUGGUCGGUUGUG-------UUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 27438 0.79 0.440643
Target:  5'- aGCCUGcGCCcccuGCUGGCCGACGCAgacgcggGCGGCg -3'
miRNA:   3'- -CGGAU-UGG----UGGUCGGUUGUGU-------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 82694 0.8 0.3796
Target:  5'- cGCC--ACCGCCAGCCGggcugGCGCGAcuCGGCg -3'
miRNA:   3'- -CGGauUGGUGGUCGGU-----UGUGUU--GCCG- -5'
21702 3' -52.4 NC_004812.1 + 128043 0.81 0.346902
Target:  5'- cGCC-AGCUGCCGGCCgAACAUcGCGGCg -3'
miRNA:   3'- -CGGaUUGGUGGUCGG-UUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 105569 0.82 0.301735
Target:  5'- gGCCUGGCUGCCGGUCcGCGgCGAUGGCa -3'
miRNA:   3'- -CGGAUUGGUGGUCGGuUGU-GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 26706 0.76 0.59051
Target:  5'- cGCCaUGGCCGCCGGCCGcuucgGCugGGgccUGGCg -3'
miRNA:   3'- -CGG-AUUGGUGGUCGGU-----UGugUU---GCCG- -5'
21702 3' -52.4 NC_004812.1 + 70467 0.76 0.580123
Target:  5'- aCCgaGACCuCCAGCCA--GCAACGGCg -3'
miRNA:   3'- cGGa-UUGGuGGUCGGUugUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 57219 0.77 0.559472
Target:  5'- cCCcAGCCGCCGcagcGCCGACACGgcgcuGCGGCu -3'
miRNA:   3'- cGGaUUGGUGGU----CGGUUGUGU-----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 49202 0.77 0.549222
Target:  5'- gGCCUGGCCGCacccGCCGuuuCGGCGGCg -3'
miRNA:   3'- -CGGAUUGGUGgu--CGGUuguGUUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.