miRNA display CGI


Results 81 - 100 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 120463 0.76 0.600929
Target:  5'- cCCUGcGCCGCCacGGCCAACcCGugGGCc -3'
miRNA:   3'- cGGAU-UGGUGG--UCGGUUGuGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 53032 0.75 0.632299
Target:  5'- aCCgcuACCugCGcGCCAGCACG-CGGCa -3'
miRNA:   3'- cGGau-UGGugGU-CGGUUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 55817 0.75 0.642767
Target:  5'- gGUCUucgGGCCcgagGCCGGCCAccGCACGAuCGGCg -3'
miRNA:   3'- -CGGA---UUGG----UGGUCGGU--UGUGUU-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 48578 0.75 0.653226
Target:  5'- cGCCgucaccuCCACCGGCggCGACGCGgccGCGGCc -3'
miRNA:   3'- -CGGauu----GGUGGUCG--GUUGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 124234 0.75 0.66992
Target:  5'- aCCUGGCgGCgGGCCuggcggggggcgcGCGCGGCGGCg -3'
miRNA:   3'- cGGAUUGgUGgUCGGu------------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 51691 0.74 0.684461
Target:  5'- gGCCUcgguACCGCguGCCAggaagagcgccuGCGCcACGGCg -3'
miRNA:   3'- -CGGAu---UGGUGguCGGU------------UGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 102175 0.74 0.694794
Target:  5'- cGUCUGcccGCCGCCGaCCGGCGCcACGGUg -3'
miRNA:   3'- -CGGAU---UGGUGGUcGGUUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 49808 0.77 0.559472
Target:  5'- uGCCUGcCgGgCAGCCAGCGCGugGGg -3'
miRNA:   3'- -CGGAUuGgUgGUCGGUUGUGUugCCg -5'
21702 3' -52.4 NC_004812.1 + 153818 0.77 0.5482
Target:  5'- aGCCguUGGCCugCAcGCCcacgaugagauagGACACGGCGGCg -3'
miRNA:   3'- -CGG--AUUGGugGU-CGG-------------UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 77447 0.77 0.527897
Target:  5'- aCCUGuCCGCCGGCCGACACcaccccaAGCGcGCc -3'
miRNA:   3'- cGGAUuGGUGGUCGGUUGUG-------UUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 88083 0.74 0.725427
Target:  5'- cGCCUcuaGACUuuCCAGCgAGCGCGACaGCa -3'
miRNA:   3'- -CGGA---UUGGu-GGUCGgUUGUGUUGcCG- -5'
21702 3' -52.4 NC_004812.1 + 96261 0.74 0.72946
Target:  5'- gGCCgccCUGCCGGCCGACAuCAccuucacgaugcucgACGGCg -3'
miRNA:   3'- -CGGauuGGUGGUCGGUUGU-GU---------------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 27681 0.73 0.744453
Target:  5'- cGCCgcguGCCGCCggggcccAGCC-ACACGcCGGCg -3'
miRNA:   3'- -CGGau--UGGUGG-------UCGGuUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 29976 0.73 0.755303
Target:  5'- aGCCUGGCgGCCGGCUucuGCcucgcCGGCGGUc -3'
miRNA:   3'- -CGGAUUGgUGGUCGGu--UGu----GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 49019 0.73 0.755303
Target:  5'- uGCCUGGCCACCAuCCugcagauguACAUguccgucggGGCGGCg -3'
miRNA:   3'- -CGGAUUGGUGGUcGGu--------UGUG---------UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 70924 0.82 0.316269
Target:  5'- gGUCUGGCCGCCAG-CGAUACAggcggGCGGCg -3'
miRNA:   3'- -CGGAUUGGUGGUCgGUUGUGU-----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 56639 0.81 0.354884
Target:  5'- uGCCUGGCC-CCcGCCGGCACGGCccaccGGCa -3'
miRNA:   3'- -CGGAUUGGuGGuCGGUUGUGUUG-----CCG- -5'
21702 3' -52.4 NC_004812.1 + 19008 0.79 0.429626
Target:  5'- cGCCUcgaaGAUCACCAgGCCGGCGCuccauauguccaccGACGGCg -3'
miRNA:   3'- -CGGA----UUGGUGGU-CGGUUGUG--------------UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 76979 0.79 0.441569
Target:  5'- gGCCggGGCCGCCGGCCAcggccgcccuCACcGCGGCc -3'
miRNA:   3'- -CGGa-UUGGUGGUCGGUu---------GUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 73910 0.78 0.489167
Target:  5'- aGCC--GCCGUCGGCCGGCGCccAGCGGCg -3'
miRNA:   3'- -CGGauUGGUGGUCGGUUGUG--UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.