miRNA display CGI

Results 21 - 40 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	95913	0.66	0.986032
	Target:  5'- gGUCUA-CUcgaucgaggggACCuucCCGACGCAGCGGCu -3' miRNA:   3'- -CGGAUuGG-----------UGGuc-GGUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	133546	0.66	0.986032
	Target:  5'- --gUGGCCACCaugcgGGCCGcggcgucgaGCuCGGCGGCg -3' miRNA:   3'- cggAUUGGUGG-----UCGGU---------UGuGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	113884	0.66	0.986032
	Target:  5'- aCCUcuguGGCCG-CGGCCAAC-CGcccGCGGCc -3' miRNA:   3'- cGGA----UUGGUgGUCGGUUGuGU---UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	112552	0.66	0.986032
	Target:  5'- cGCCgagcgggggGGCgCGCCGuCCGACGCGcaggugacgcGCGGCc -3' miRNA:   3'- -CGGa--------UUG-GUGGUcGGUUGUGU----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	106435	0.66	0.986032
	Target:  5'- cGCC-GGCCACgGGCCcaagagGGCcCGGCGGa -3' miRNA:   3'- -CGGaUUGGUGgUCGG------UUGuGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	50273	0.66	0.986032
	Target:  5'- cGCCgggcgcgAACCgGCgGGUCuGCGCGGgGGCg -3' miRNA:   3'- -CGGa------UUGG-UGgUCGGuUGUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	39400	0.66	0.986032
	Target:  5'- gGCCggcGGCCGCCcgAGCCGGCugccuuuUAucccggucgccGCGGCg -3' miRNA:   3'- -CGGa--UUGGUGG--UCGGUUGu------GU-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	33869	0.66	0.986032
	Target:  5'- cGCCcucuccCCGCCcGCC--CGCAugGGCc -3' miRNA:   3'- -CGGauu---GGUGGuCGGuuGUGUugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	2076	0.66	0.986032
	Target:  5'- cGCCccccgcguCUACCAGUCcuCGgGGCGGCc -3' miRNA:   3'- -CGGauu-----GGUGGUCGGuuGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	140637	0.66	0.986032
	Target:  5'- gGUCggcGCCGCCGGCCGcgGgGCGucCGGUc -3' miRNA:   3'- -CGGau-UGGUGGUCGGU--UgUGUu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	71930	0.66	0.986032
	Target:  5'- gGCCUGGCCccgagcggguCCAGCCccaacaacCACAGCguGGUg -3' miRNA:   3'- -CGGAUUGGu---------GGUCGGuu------GUGUUG--CCG- -5'
21702	3'	-52.4	NC_004812.1	+	94257	0.66	0.986032
	Target:  5'- cGCCgacccacgcGCCGCgGGCgcGCGCcGCGGCc -3' miRNA:   3'- -CGGau-------UGGUGgUCGguUGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	8499	0.66	0.986032
	Target:  5'- gGCCggcGGCCGCCcgAGCCGGCugccuuuUAucccggucgccGCGGCg -3' miRNA:   3'- -CGGa--UUGGUGG--UCGGUUGu------GU-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	133949	0.66	0.986032
	Target:  5'- gGCUc--CCGCCGGCCccgGGCAC-GCGGg -3' miRNA:   3'- -CGGauuGGUGGUCGG---UUGUGuUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	79306	0.66	0.985861
	Target:  5'- gGCCcaGGCCAUCuacaagauuaacgAGCgGACGguGCGGCg -3' miRNA:   3'- -CGGa-UUGGUGG-------------UCGgUUGUguUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	69302	0.66	0.985861
	Target:  5'- uCCaGGCCcucaaagaaggguACCAGCUGACucuCGugGGCg -3' miRNA:   3'- cGGaUUGG-------------UGGUCGGUUGu--GUugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	58578	0.66	0.985689
	Target:  5'- cGCCgagAACCGCUugaugaAGCCcAGCGCcucgauguccucGCGGCu -3' miRNA:   3'- -CGGa--UUGGUGG------UCGG-UUGUGu-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	18041	0.66	0.98534
	Target:  5'- aGCCgacGACCggcACCAGCagcgaggcguuCACGAgGGCg -3' miRNA:   3'- -CGGa--UUGG---UGGUCGguu--------GUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	491	0.66	0.984984
	Target:  5'- cGCCUGcugcccgaacucacgGCCGCCgcGGCCGGgGCG--GGCc -3' miRNA:   3'- -CGGAU---------------UGGUGG--UCGGUUgUGUugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	81288	0.66	0.984984
	Target:  5'- gGCgaGACCugCGucGCCAGCGCgucgcagacccccagGugGGCc -3' miRNA:   3'- -CGgaUUGGugGU--CGGUUGUG---------------UugCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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