miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 3018 0.66 0.698341
Target:  5'- gCGGCCG-UGUcGGGCccgcaGAGGCGGuuGc -3'
miRNA:   3'- -GUCGGCaACAcUCCG-----CUCCGCCggCc -5'
21702 5' -60.9 NC_004812.1 + 72149 0.66 0.693503
Target:  5'- gAGCCGaacgaacccagaggcGGGCGAGGCGGacCCGGa -3'
miRNA:   3'- gUCGGCaacac----------UCCGCUCCGCC--GGCC- -5'
21702 5' -60.9 NC_004812.1 + 142193 0.66 0.736497
Target:  5'- uGGCCGgcGcGGGGCu-GGCcGCCGGc -3'
miRNA:   3'- gUCGGCaaCaCUCCGcuCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 37230 0.66 0.745848
Target:  5'- gCGGCCGUUGUGcagcauGGCGuuGaGCGuGuuGGc -3'
miRNA:   3'- -GUCGGCAACACu-----CCGCu-C-CGC-CggCC- -5'
21702 5' -60.9 NC_004812.1 + 3569 0.66 0.698341
Target:  5'- -cGCCGgcGggcAGGCGGcGGCGGCggCGGg -3'
miRNA:   3'- guCGGCaaCac-UCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 86487 0.66 0.717554
Target:  5'- uGGUCGUUGacgGAGccgcuGCGGGcccccgggaaGCGGCCGGu -3'
miRNA:   3'- gUCGGCAACa--CUC-----CGCUC----------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 7510 0.66 0.705092
Target:  5'- gGGCCGgagcgaaaggaggGAGGgGGGGCGGCgaugcgCGGg -3'
miRNA:   3'- gUCGGCaaca---------CUCCgCUCCGCCG------GCC- -5'
21702 5' -60.9 NC_004812.1 + 75797 0.66 0.727064
Target:  5'- cCAGUCGa--UGcGGCG-GGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacACuCCGCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 25866 0.66 0.727064
Target:  5'- gGGCC----UGGGGuUGGcGGCGGCCGGc -3'
miRNA:   3'- gUCGGcaacACUCC-GCU-CCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 125165 0.66 0.698341
Target:  5'- -cGCCGggGcggGAGGCGGGaG-GGcCCGGg -3'
miRNA:   3'- guCGGCaaCa--CUCCGCUC-CgCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 71205 0.66 0.727064
Target:  5'- gGGCCGcgccagGcGGCGAgcgGGCGGCCGc -3'
miRNA:   3'- gUCGGCaaca--CuCCGCU---CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 133904 0.66 0.717554
Target:  5'- uCGGCCGUgGUaaccccGGGCGGGGgGGaCgCGGg -3'
miRNA:   3'- -GUCGGCAaCAc-----UCCGCUCCgCC-G-GCC- -5'
21702 5' -60.9 NC_004812.1 + 54382 0.66 0.727064
Target:  5'- uGGCCGUc---GGGCGcccgcGGGCacGGCCGGg -3'
miRNA:   3'- gUCGGCAacacUCCGC-----UCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 54660 0.66 0.727064
Target:  5'- -cGCCGccGcGGGGCccaGCGGCCGGg -3'
miRNA:   3'- guCGGCaaCaCUCCGcucCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 138466 0.66 0.698341
Target:  5'- gGGCUGUc--GGGGCGGGGC-GCCGc -3'
miRNA:   3'- gUCGGCAacaCUCCGCUCCGcCGGCc -5'
21702 5' -60.9 NC_004812.1 + 121790 0.66 0.707977
Target:  5'- gGGCCGcUUGggcccucgcguggcgGGGGCggccucgGAGGCggaGGCCGGg -3'
miRNA:   3'- gUCGGC-AACa--------------CUCCG-------CUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 105183 0.66 0.727064
Target:  5'- gCGGCCGcgUGccugcGAGcGCGGGGCgcgGGCgCGGg -3'
miRNA:   3'- -GUCGGCa-ACa----CUC-CGCUCCG---CCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 92901 0.66 0.717554
Target:  5'- gCAGCgCGUguggGUcGAGGauccCGAGGCGGaggCGGg -3'
miRNA:   3'- -GUCG-GCAa---CA-CUCC----GCUCCGCCg--GCC- -5'
21702 5' -60.9 NC_004812.1 + 737 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 9001 0.66 0.698341
Target:  5'- -uGCUGUUGUG-GGCGcuuGG-GGCCGu -3'
miRNA:   3'- guCGGCAACACuCCGCu--CCgCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.