miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 3211 0.66 0.685738
Target:  5'- gCAGCgGgcccGAGGCGcgcggcgggccgaaGGcGCGGCCGGa -3'
miRNA:   3'- -GUCGgCaacaCUCCGC--------------UC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 78978 0.66 0.744917
Target:  5'- -cGCCGggGgucgGGGGUgcgccgggggucgGGGGUGcGCCGGg -3'
miRNA:   3'- guCGGCaaCa---CUCCG-------------CUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 115256 0.66 0.685738
Target:  5'- cCGGUgGUgcgugGuUGAGGCGuAGGCcagcuccaucccgcGGCCGGa -3'
miRNA:   3'- -GUCGgCAa----C-ACUCCGC-UCCG--------------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 3018 0.66 0.698341
Target:  5'- gCGGCCG-UGUcGGGCccgcaGAGGCGGuuGc -3'
miRNA:   3'- -GUCGGCaACAcUCCG-----CUCCGCCggCc -5'
21702 5' -60.9 NC_004812.1 + 156066 0.66 0.698341
Target:  5'- -cGCCGggGcggGAGGCGGGaG-GGcCCGGg -3'
miRNA:   3'- guCGGCaaCa--CUCCGCUC-CgCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 29279 0.66 0.698341
Target:  5'- gAGgaGggGggaggaGAGGCGAGGCGcgcaGCCGGg -3'
miRNA:   3'- gUCggCaaCa-----CUCCGCUCCGC----CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 3569 0.66 0.698341
Target:  5'- -cGCCGgcGggcAGGCGGcGGCGGCggCGGg -3'
miRNA:   3'- guCGGCaaCac-UCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 1972 0.66 0.688653
Target:  5'- -cGCCGggGggagGGGGggaGGGGUGGCgGGu -3'
miRNA:   3'- guCGGCaaCa---CUCCg--CUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 76175 0.66 0.707977
Target:  5'- gCGGgCGgc-UGGGGUG-GGCGGCgGGg -3'
miRNA:   3'- -GUCgGCaacACUCCGCuCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 38411 0.66 0.705092
Target:  5'- gGGCCGgagcgaaaggaggGAGGgGGGGCGGCgaugcgCGGg -3'
miRNA:   3'- gUCGGCaaca---------CUCCgCUCCGCCG------GCC- -5'
21702 5' -60.9 NC_004812.1 + 148536 0.66 0.707977
Target:  5'- nGGCCGccggGcGcGGCGGGGUcgcgGGCCGGc -3'
miRNA:   3'- gUCGGCaa--CaCuCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 31638 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 72149 0.66 0.693503
Target:  5'- gAGCCGaacgaacccagaggcGGGCGAGGCGGacCCGGa -3'
miRNA:   3'- gUCGGCaacac----------UCCGCUCCGCC--GGCC- -5'
21702 5' -60.9 NC_004812.1 + 37427 0.66 0.717554
Target:  5'- gAGCaGggG-GGGGCGGGG-GGCCGa -3'
miRNA:   3'- gUCGgCaaCaCUCCGCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 82356 0.66 0.716599
Target:  5'- gCGGCCGggGcGAGGCGuaccugcGGGCGcGCgGa -3'
miRNA:   3'- -GUCGGCaaCaCUCCGC-------UCCGC-CGgCc -5'
21702 5' -60.9 NC_004812.1 + 30950 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 59706 0.66 0.736497
Target:  5'- gAGCgGcgGcGAgcGGCGAGGCGGgcccCCGGg -3'
miRNA:   3'- gUCGgCaaCaCU--CCGCUCCGCC----GGCC- -5'
21702 5' -60.9 NC_004812.1 + 61202 0.66 0.688653
Target:  5'- uGGCgGggGaacgauGGGCGGGGgGGCUGGg -3'
miRNA:   3'- gUCGgCaaCac----UCCGCUCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 30166 0.66 0.736497
Target:  5'- aCAGCCGg---GAGcGCGcGGCgGGCuCGGc -3'
miRNA:   3'- -GUCGGCaacaCUC-CGCuCCG-CCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 17023 0.66 0.734617
Target:  5'- gAGCCGggggGUGAaggggucGGCGGGGggcgccucgguccCGGCCGc -3'
miRNA:   3'- gUCGGCaa--CACU-------CCGCUCC-------------GCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.