miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 129077 0.66 0.698341
Target:  5'- -cGCCGgcGggcAGGCGGcGGCGGCggCGGg -3'
miRNA:   3'- guCGGCaaCac-UCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 125165 0.66 0.698341
Target:  5'- -cGCCGggGcggGAGGCGGGaG-GGcCCGGg -3'
miRNA:   3'- guCGGCaaCa--CUCCGCUC-CgCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 49 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 737 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 76721 0.66 0.717554
Target:  5'- aAGuuGggGUGgAGGCcggaGAGcGCGGCCGc -3'
miRNA:   3'- gUCggCaaCAC-UCCG----CUC-CGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 5011 0.66 0.698341
Target:  5'- gCGGgCGggGgcgGcAGGUGGGGCGGCaggCGGg -3'
miRNA:   3'- -GUCgGCaaCa--C-UCCGCUCCGCCG---GCC- -5'
21702 5' -60.9 NC_004812.1 + 9001 0.66 0.698341
Target:  5'- -uGCUGUUGUG-GGCGcuuGG-GGCCGu -3'
miRNA:   3'- guCGGCAACACuCCGCu--CCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 19151 0.66 0.698341
Target:  5'- -cGCCGcgG-GGGGCGcGGCGGCgGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCuCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 128527 0.66 0.698341
Target:  5'- gCGGCCG-UGUcGGGCccgcaGAGGCGGuuGc -3'
miRNA:   3'- -GUCGGCaACAcUCCG-----CUCCGCCggCc -5'
21702 5' -60.9 NC_004812.1 + 6793 0.67 0.659362
Target:  5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3'
miRNA:   3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 13103 0.67 0.678923
Target:  5'- gCGGCCGacGgcgGAGGCGuguagauGCGGCuCGGg -3'
miRNA:   3'- -GUCGGCaaCa--CUCCGCuc-----CGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 46823 0.67 0.669156
Target:  5'- gCGGCCGUcGgcccGGuCGAGGgGGCCGu -3'
miRNA:   3'- -GUCGGCAaCacu-CC-GCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 12806 0.67 0.663283
Target:  5'- aCGGCCGUcgggccgauggggaGUG-GGCGGGGaagGGCCGa -3'
miRNA:   3'- -GUCGGCAa-------------CACuCCGCUCCg--CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 64397 0.67 0.659362
Target:  5'- cCGGCCcc---GAGGCGAGGCugagggcgagGGCCGa -3'
miRNA:   3'- -GUCGGcaacaCUCCGCUCCG----------CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 61438 0.67 0.669156
Target:  5'- cCGGCCGUc-UGAGGgcccgcCGAGacCGGCCGGg -3'
miRNA:   3'- -GUCGGCAacACUCC------GCUCc-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 114914 0.67 0.669156
Target:  5'- uGGCuCGgUGUGucguggcuGGCGGGGgGGuuGGg -3'
miRNA:   3'- gUCG-GCaACACu-------CCGCUCCgCCggCC- -5'
21702 5' -60.9 NC_004812.1 + 50640 0.67 0.639721
Target:  5'- gGGCUGUgg-GGGGCGGGGC--CCGGc -3'
miRNA:   3'- gUCGGCAacaCUCCGCUCCGccGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155380 0.67 0.681846
Target:  5'- aAGCCGUccgccaggaaccccgGGGGCcGGGCcgGGCCGGg -3'
miRNA:   3'- gUCGGCAaca------------CUCCGcUCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 122122 0.67 0.678923
Target:  5'- gGGCCag-GgccuGGGCGAGGaCGGCCuGGg -3'
miRNA:   3'- gUCGGcaaCac--UCCGCUCC-GCCGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 73222 0.67 0.669156
Target:  5'- gCGGCCGcccugcggGUcGGGCG-GGCGGCCc- -3'
miRNA:   3'- -GUCGGCaa------CAcUCCGCuCCGCCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.