Results 101 - 120 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21702 | 5' | -60.9 | NC_004812.1 | + | 36449 | 0.67 | 0.659362 |
Target: 5'- gCGGCCGcgUUGUcGAGgaGCGGGGgGGCCc- -3' miRNA: 3'- -GUCGGC--AACA-CUC--CGCUCCgCCGGcc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 19756 | 0.67 | 0.659362 |
Target: 5'- cCAGCCcg-GUGcgggggucccAGGCGAcGCGcGCCGGg -3' miRNA: 3'- -GUCGGcaaCAC----------UCCGCUcCGC-CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 92493 | 0.67 | 0.659362 |
Target: 5'- uGGCCGUc--GAGGC--GGCGGcCCGGc -3' miRNA: 3'- gUCGGCAacaCUCCGcuCCGCC-GGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 6793 | 0.67 | 0.659362 |
Target: 5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3' miRNA: 3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 50640 | 0.67 | 0.639721 |
Target: 5'- gGGCUGUgg-GGGGCGGGGC--CCGGc -3' miRNA: 3'- gUCGGCAacaCUCCGCUCCGccGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 85989 | 0.67 | 0.639721 |
Target: 5'- -cGCUGgaaaggggaggUGUGGGGUG-GGUGuGCCGGg -3' miRNA: 3'- guCGGCa----------ACACUCCGCuCCGC-CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 76515 | 0.67 | 0.653476 |
Target: 5'- aGGCCGUcgacggcugccUGgucGAgGGCGGGGCguggacgcgggccucGGCCGGc -3' miRNA: 3'- gUCGGCA-----------ACa--CU-CCGCUCCG---------------CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 10396 | 0.67 | 0.659362 |
Target: 5'- gGGCCGgc--GGGGUGAGGgGGaucaCGGa -3' miRNA: 3'- gUCGGCaacaCUCCGCUCCgCCg---GCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 11341 | 0.67 | 0.659362 |
Target: 5'- gGGCCGacggUGUG-GGCucgacgggaggGGGGCGGuaCCGGg -3' miRNA: 3'- gUCGGCa---ACACuCCG-----------CUCCGCC--GGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 37694 | 0.67 | 0.659362 |
Target: 5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3' miRNA: 3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 12806 | 0.67 | 0.663283 |
Target: 5'- aCGGCCGUcgggccgauggggaGUG-GGCGGGGaagGGCCGa -3' miRNA: 3'- -GUCGGCAa-------------CACuCCGCUCCg--CCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 72845 | 0.67 | 0.669156 |
Target: 5'- gCAGUCGcUGUGGGcGCGcuGGCGucccuggcggcaGCCGGg -3' miRNA: 3'- -GUCGGCaACACUC-CGCu-CCGC------------CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 46823 | 0.67 | 0.669156 |
Target: 5'- gCGGCCGUcGgcccGGuCGAGGgGGCCGu -3' miRNA: 3'- -GUCGGCAaCacu-CC-GCUCCgCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 13103 | 0.67 | 0.678923 |
Target: 5'- gCGGCCGacGgcgGAGGCGuguagauGCGGCuCGGg -3' miRNA: 3'- -GUCGGCaaCa--CUCCGCuc-----CGCCG-GCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 153023 | 0.67 | 0.678923 |
Target: 5'- gGGCCag-GgccuGGGCGAGGaCGGCCuGGg -3' miRNA: 3'- gUCGGcaaCac--UCCGCUCC-GCCGG-CC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 29872 | 0.67 | 0.681846 |
Target: 5'- aAGCCGUccgccaggaaccccgGGGGCcGGGCcgGGCCGGg -3' miRNA: 3'- gUCGGCAaca------------CUCCGcUCCG--CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 105663 | 0.67 | 0.678923 |
Target: 5'- --cCCGgcGUGGuGGUGGGGCGcguacGCCGGg -3' miRNA: 3'- gucGGCaaCACU-CCGCUCCGC-----CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 79030 | 0.67 | 0.678923 |
Target: 5'- uCGGCUGgc-UGGGGuCGGGggccgcggcccaGCGGCCGGa -3' miRNA: 3'- -GUCGGCaacACUCC-GCUC------------CGCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 58535 | 0.67 | 0.638738 |
Target: 5'- -uGuuGUUG-GGGGCGAGGUugacgaaguucgaGGCCGc -3' miRNA: 3'- guCggCAACaCUCCGCUCCG-------------CCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 95483 | 0.67 | 0.639721 |
Target: 5'- uGGuuGUUGUGcgcGGGCGccGGCGcGCCGcGg -3' miRNA: 3'- gUCggCAACAC---UCCGCu-CCGC-CGGC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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