Results 121 - 140 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21702 | 5' | -60.9 | NC_004812.1 | + | 18527 | 0.67 | 0.639721 |
Target: 5'- aCAGCCGcgGaacGAGGCGGcgcauGGCGGCgCGu -3' miRNA: 3'- -GUCGGCaaCa--CUCCGCU-----CCGCCG-GCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 46823 | 0.67 | 0.669156 |
Target: 5'- gCGGCCGUcGgcccGGuCGAGGgGGCCGu -3' miRNA: 3'- -GUCGGCAaCacu-CC-GCUCCgCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 76515 | 0.67 | 0.653476 |
Target: 5'- aGGCCGUcgacggcugccUGgucGAgGGCGGGGCguggacgcgggccucGGCCGGc -3' miRNA: 3'- gUCGGCA-----------ACa--CU-CCGCUCCG---------------CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 10396 | 0.67 | 0.659362 |
Target: 5'- gGGCCGgc--GGGGUGAGGgGGaucaCGGa -3' miRNA: 3'- gUCGGCaacaCUCCGCUCCgCCg---GCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 11341 | 0.67 | 0.659362 |
Target: 5'- gGGCCGacggUGUG-GGCucgacgggaggGGGGCGGuaCCGGg -3' miRNA: 3'- gUCGGCa---ACACuCCG-----------CUCCGCC--GGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 85989 | 0.67 | 0.639721 |
Target: 5'- -cGCUGgaaaggggaggUGUGGGGUG-GGUGuGCCGGg -3' miRNA: 3'- guCGGCa----------ACACUCCGCuCCGC-CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 95483 | 0.67 | 0.639721 |
Target: 5'- uGGuuGUUGUGcgcGGGCGccGGCGcGCCGcGg -3' miRNA: 3'- gUCggCAACAC---UCCGCu-CCGC-CGGC-C- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 58535 | 0.67 | 0.638738 |
Target: 5'- -uGuuGUUG-GGGGCGAGGUugacgaaguucgaGGCCGc -3' miRNA: 3'- guCggCAACaCUCCGCUCCG-------------CCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 72845 | 0.67 | 0.669156 |
Target: 5'- gCAGUCGcUGUGGGcGCGcuGGCGucccuggcggcaGCCGGg -3' miRNA: 3'- -GUCGGCaACACUC-CGCu-CCGC------------CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 46000 | 0.67 | 0.628905 |
Target: 5'- -cGCCGUUGcG-GGCGGGGCGuggaagugaaaccGCCGcGg -3' miRNA: 3'- guCGGCAACaCuCCGCUCCGC-------------CGGC-C- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 17595 | 0.67 | 0.645618 |
Target: 5'- aCAGCagacugcGGGCGAGGCGGgcCCGGg -3' miRNA: 3'- -GUCGgcaacacUCCGCUCCGCC--GGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 29872 | 0.67 | 0.681846 |
Target: 5'- aAGCCGUccgccaggaaccccgGGGGCcGGGCcgGGCCGGg -3' miRNA: 3'- gUCGGCAaca------------CUCCGcUCCG--CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 153023 | 0.67 | 0.678923 |
Target: 5'- gGGCCag-GgccuGGGCGAGGaCGGCCuGGg -3' miRNA: 3'- gUCGGcaaCac--UCCGCUCC-GCCGG-CC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 105663 | 0.67 | 0.678923 |
Target: 5'- --cCCGgcGUGGuGGUGGGGCGcguacGCCGGg -3' miRNA: 3'- gucGGCaaCACU-CCGCUCCGC-----CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 13103 | 0.67 | 0.678923 |
Target: 5'- gCGGCCGacGgcgGAGGCGuguagauGCGGCuCGGg -3' miRNA: 3'- -GUCGGCaaCa--CUCCGCuc-----CGCCG-GCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 12806 | 0.67 | 0.663283 |
Target: 5'- aCGGCCGUcgggccgauggggaGUG-GGCGGGGaagGGCCGa -3' miRNA: 3'- -GUCGGCAa-------------CACuCCGCUCCg--CCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 64397 | 0.67 | 0.659362 |
Target: 5'- cCGGCCcc---GAGGCGAGGCugagggcgagGGCCGa -3' miRNA: 3'- -GUCGGcaacaCUCCGCUCCG----------CCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 37694 | 0.67 | 0.659362 |
Target: 5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3' miRNA: 3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 152640 | 0.67 | 0.639721 |
Target: 5'- gGGCCGgcGcGcGGCGGGGgGgcGCCGGg -3' miRNA: 3'- gUCGGCaaCaCuCCGCUCCgC--CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 37727 | 0.68 | 0.620058 |
Target: 5'- gGGCUGg-GUGGGGgGcGGCGGCCc- -3' miRNA: 3'- gUCGGCaaCACUCCgCuCCGCCGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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