miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 40062 0.73 0.330066
Target:  5'- gCGGCCGcucGUGcgcuuuuccGGGCGgcgggcggcGGGCGGCCGGg -3'
miRNA:   3'- -GUCGGCaa-CAC---------UCCGC---------UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 61098 0.73 0.330066
Target:  5'- -cGCCGggGUcGAGGCGGcgccccgcGGCGcGCCGGc -3'
miRNA:   3'- guCGGCaaCA-CUCCGCU--------CCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121243 0.72 0.391086
Target:  5'- aGGCCGU----GGGCGGGGUcGCCGGg -3'
miRNA:   3'- gUCGGCAacacUCCGCUCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 153266 0.72 0.359673
Target:  5'- gGGCCGggGcgcGGGGCGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCa--CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 151913 0.72 0.383067
Target:  5'- aCAGCCGccc-GGGGCucuGGGGCGcGCCGGa -3'
miRNA:   3'- -GUCGGCaacaCUCCG---CUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 82799 0.72 0.375157
Target:  5'- gAGCUGggGUGGGagcGCGGGGCG-CCGGc -3'
miRNA:   3'- gUCGGCaaCACUC---CGCUCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 83234 0.72 0.375157
Target:  5'- cCAGCgGgaugGgggacaccgGGGGCGAGGCgucGGCCGGg -3'
miRNA:   3'- -GUCGgCaa--Ca--------CUCCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 26329 0.72 0.367359
Target:  5'- gCGGCCGcucgGGGGUcccgGGGGUGGCCGGc -3'
miRNA:   3'- -GUCGGCaacaCUCCG----CUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 122365 0.72 0.359673
Target:  5'- gGGCCGggGcgcGGGGCGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCa--CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 44192 0.72 0.359673
Target:  5'- gCGGCgGggGUGGGGCucGGcGGCGGCgCGGa -3'
miRNA:   3'- -GUCGgCaaCACUCCG--CU-CCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 72299 0.72 0.399214
Target:  5'- gGGCCGggGcGGGGggacggaucgauCGGGcGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCC------------GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 130475 0.72 0.399214
Target:  5'- gCGGCCGgcG-GcGGCGAGGCGGggggcgacggguCCGGg -3'
miRNA:   3'- -GUCGGCaaCaCuCCGCUCCGCC------------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 52222 0.72 0.378308
Target:  5'- -cGCCGUcuguuucgcccucggUGgggGAGGUGcGGGCGGCUGGu -3'
miRNA:   3'- guCGGCA---------------ACa--CUCCGC-UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 105201 0.72 0.374372
Target:  5'- aGGCgGgugGUG-GGCGAgcgcgccGGCGGCCGGc -3'
miRNA:   3'- gUCGgCaa-CACuCCGCU-------CCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 26405 0.72 0.383067
Target:  5'- aCAGCCGccc-GGGGCucuGGGGCGcGCCGGa -3'
miRNA:   3'- -GUCGGCaacaCUCCG---CUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 4967 0.72 0.391086
Target:  5'- gCGGCCGgcG-GcGGCGAGGCGGgggcgacggguCCGGg -3'
miRNA:   3'- -GUCGGCaaCaCuCCGCUCCGCC-----------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 62003 0.72 0.391086
Target:  5'- cCGGCCGgUGcgcggGAcaggccgcGGCGAGGCGGCCucGGg -3'
miRNA:   3'- -GUCGGCaACa----CU--------CCGCUCCGCCGG--CC- -5'
21702 5' -60.9 NC_004812.1 + 21132 0.72 0.367359
Target:  5'- gCGGCCG-UGUGuGGCGugccGCGGCgGGg -3'
miRNA:   3'- -GUCGGCaACACuCCGCuc--CGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 107635 0.72 0.383067
Target:  5'- gCGGCCGcgucGcGGGGCacgucgccgGGGGCGGCCGGc -3'
miRNA:   3'- -GUCGGCaa--CaCUCCG---------CUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 152144 0.72 0.391086
Target:  5'- aGGCCGU----GGGCGGGGUcGCCGGg -3'
miRNA:   3'- gUCGGCAacacUCCGCUCCGcCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.