Results 61 - 80 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21702 | 5' | -60.9 | NC_004812.1 | + | 93491 | 0.71 | 0.424235 |
Target: 5'- gGGCCGag--GAgGGCgGAGaGCGGCCGGg -3' miRNA: 3'- gUCGGCaacaCU-CCG-CUC-CGCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 121739 | 0.71 | 0.424235 |
Target: 5'- gGGCCGgcGcGcGGCGGGGgGcGCCGGg -3' miRNA: 3'- gUCGGCaaCaCuCCGCUCCgC-CGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 48142 | 0.71 | 0.450171 |
Target: 5'- uGGCCGUccucGAGGCGcGGCG-CCGGg -3' miRNA: 3'- gUCGGCAaca-CUCCGCuCCGCcGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 69000 | 0.71 | 0.424235 |
Target: 5'- cCGGCCacgcUGcGGGGCGGGGagugcgaGGCCGGg -3' miRNA: 3'- -GUCGGca--ACaCUCCGCUCCg------CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 58402 | 0.71 | 0.424235 |
Target: 5'- gCGGCCGccgccUG-GAGGCugggGGGGCGGCgGGa -3' miRNA: 3'- -GUCGGCa----ACaCUCCG----CUCCGCCGgCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 77455 | 0.71 | 0.416631 |
Target: 5'- uCGGCCGggGggcucguggcgagcgGAGGCGGGGCuGGgacCCGGg -3' miRNA: 3'- -GUCGGCaaCa--------------CUCCGCUCCG-CC---GGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 73180 | 0.71 | 0.40745 |
Target: 5'- gGGCCGguacagggcGUG-GGCGGGcGgGGCCGGg -3' miRNA: 3'- gUCGGCaa-------CACuCCGCUC-CgCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 63218 | 0.71 | 0.432782 |
Target: 5'- aGGCgGgcGggGAGGaCGAGGCGGCCu- -3' miRNA: 3'- gUCGgCaaCa-CUCC-GCUCCGCCGGcc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 116934 | 0.71 | 0.432782 |
Target: 5'- aGGCCGgaGUGGGG-GGGGUGGCgGu -3' miRNA: 3'- gUCGGCaaCACUCCgCUCCGCCGgCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 88198 | 0.71 | 0.419156 |
Target: 5'- uCGGCCGc---GGGGCGAgccgcggccccggacGGCGGCUGGg -3' miRNA: 3'- -GUCGGCaacaCUCCGCU---------------CCGCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 105799 | 0.71 | 0.424235 |
Target: 5'- -cGCCGggGggcuugGGGGUGGGGgcucCGGCCGGc -3' miRNA: 3'- guCGGCaaCa-----CUCCGCUCC----GCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 1425 | 0.71 | 0.432782 |
Target: 5'- gCGGCCGcgGggaGGGGcCGGGGCcgcgagGGCCGGg -3' miRNA: 3'- -GUCGGCaaCa--CUCC-GCUCCG------CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 116294 | 0.71 | 0.432782 |
Target: 5'- -cGCUGUcucUGUGGuacGGgGGGGCGGCCGu -3' miRNA: 3'- guCGGCA---ACACU---CCgCUCCGCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 122530 | 0.71 | 0.450171 |
Target: 5'- aAGCCGgcgGUGAgucgggGGCGGGG-GGCgCGGg -3' miRNA: 3'- gUCGGCaa-CACU------CCGCUCCgCCG-GCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 72031 | 0.71 | 0.450171 |
Target: 5'- gGGCCGggacggucUGggGGGGCGGGG-GGUCGGg -3' miRNA: 3'- gUCGGCa-------ACa-CUCCGCUCCgCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 122303 | 0.71 | 0.441428 |
Target: 5'- gGGCCGcc--GGGGgGAGGCGGgCGGc -3' miRNA: 3'- gUCGGCaacaCUCCgCUCCGCCgGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 100383 | 0.71 | 0.432782 |
Target: 5'- -cGCCGgg--GGGcGCGAGGCcaccGGCCGGa -3' miRNA: 3'- guCGGCaacaCUC-CGCUCCG----CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 6099 | 0.71 | 0.432782 |
Target: 5'- gGGUCGgcGggaacgGGGGCGAcGGCGGCgGGc -3' miRNA: 3'- gUCGGCaaCa-----CUCCGCU-CCGCCGgCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 126933 | 0.71 | 0.432782 |
Target: 5'- gCGGCCGcgGggaGGGGcCGGGGCcgcgagGGCCGGg -3' miRNA: 3'- -GUCGGCaaCa--CUCC-GCUCCG------CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 68219 | 0.71 | 0.424235 |
Target: 5'- gCGGCCGgccgGGGGUGcgcGGgGGCCGGg -3' miRNA: 3'- -GUCGGCaacaCUCCGCu--CCgCCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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