miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 147835 0.71 0.432782
Target:  5'- aGGCCGgaGUGGGG-GGGGUGGCgGu -3'
miRNA:   3'- gUCGGCaaCACUCCgCUCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 94415 0.71 0.432782
Target:  5'- gCGGCCGggGggccgaaucgGuGGCGcGGGCGGCCGcGg -3'
miRNA:   3'- -GUCGGCaaCa---------CuCCGC-UCCGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 116294 0.71 0.432782
Target:  5'- -cGCUGUcucUGUGGuacGGgGGGGCGGCCGu -3'
miRNA:   3'- guCGGCA---ACACU---CCgCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 153431 0.71 0.450171
Target:  5'- aAGCCGgcggUGagucgGGGGCGGGG-GGCgCGGg -3'
miRNA:   3'- gUCGGCa---ACa----CUCCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 63218 0.71 0.432782
Target:  5'- aGGCgGgcGggGAGGaCGAGGCGGCCu- -3'
miRNA:   3'- gUCGgCaaCa-CUCC-GCUCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 153204 0.71 0.441428
Target:  5'- gGGCCGcc--GGGGgGAGGCGGgCGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgCUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 101893 0.7 0.486057
Target:  5'- -cGCCGggcuagGgcgccccGAGGCGcGGCGGUCGGg -3'
miRNA:   3'- guCGGCaa----Ca------CUCCGCuCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121292 0.7 0.504504
Target:  5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3'
miRNA:   3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 8246 0.7 0.504504
Target:  5'- gGGCCGggGguccgcccccgGGGGCGccGGgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa----------CUCCGCu-CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 12306 0.7 0.504504
Target:  5'- -cGCUGU--UGAGGCgGAGGuuGCCGGg -3'
miRNA:   3'- guCGGCAacACUCCG-CUCCgcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 117351 0.7 0.502645
Target:  5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 30079 0.7 0.464355
Target:  5'- gCGGCCGggcccucgcgGGGGCGcGGCcccGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca------CUCCGCuCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 123922 0.7 0.495241
Target:  5'- -uGCUGcgGcGGGGCGGaGCGGCCGGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 100115 0.7 0.459008
Target:  5'- gCGGgCGggGgaggggagggGAGGCGuGGCGGCgCGGg -3'
miRNA:   3'- -GUCgGCaaCa---------CUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 155588 0.7 0.464355
Target:  5'- gCGGCCGggcccucgcgGGGGCGcGGCcccGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca------CUCCGCuCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 62730 0.7 0.467937
Target:  5'- aGGCCGagGUGGaccGGCGgcuGGGCuGCCGGg -3'
miRNA:   3'- gUCGGCaaCACU---CCGC---UCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 72151 0.7 0.495241
Target:  5'- gGGCCGggGgaggcgggcuUGGGGgGAGggugcuggguGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaC----------ACUCCgCUC----------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 5620 0.7 0.476954
Target:  5'- gGGCCG----GAGGCGGcucGGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCU---CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 39833 0.7 0.486057
Target:  5'- gCGGCCGc-GUGcccguAGGCGgugcGGGgGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCAC-----UCCGC----UCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 92231 0.7 0.467937
Target:  5'- gGGCCGggagagggUGUGGccuGGCGGGGCGGa-GGa -3'
miRNA:   3'- gUCGGCa-------ACACU---CCGCUCCGCCggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.