Results 101 - 120 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21702 | 5' | -60.9 | NC_004812.1 | + | 83191 | 0.7 | 0.495241 |
Target: 5'- gAGCuCGcgGcggGAGGCGcGGCGGCCGc -3' miRNA: 3'- gUCG-GCaaCa--CUCCGCuCCGCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 148252 | 0.7 | 0.502645 |
Target: 5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3' miRNA: 3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 120877 | 0.7 | 0.504504 |
Target: 5'- -cGCUGUaGcGGGGCGGGGCGGagacgCGGg -3' miRNA: 3'- guCGGCAaCaCUCCGCUCCGCCg----GCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 39147 | 0.7 | 0.504504 |
Target: 5'- gGGCCGggGguccgcccccgGGGGCGccGGgGGCCGGc -3' miRNA: 3'- gUCGGCaaCa----------CUCCGCu-CCgCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 152193 | 0.7 | 0.504504 |
Target: 5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3' miRNA: 3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 124173 | 0.7 | 0.504504 |
Target: 5'- -uGCCGguacGUGGGGCGgcugGGcGCGGCCGc -3' miRNA: 3'- guCGGCaa--CACUCCGC----UC-CGCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 88939 | 0.7 | 0.504504 |
Target: 5'- uGGCCGccggUGgcGAGGaGGGcGCGGCCGGc -3' miRNA: 3'- gUCGGCa---ACa-CUCCgCUC-CGCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 142544 | 0.7 | 0.495241 |
Target: 5'- -cGUCGUgaucgacGAGGCGGGGCuucugGGCCGGc -3' miRNA: 3'- guCGGCAaca----CUCCGCUCCG-----CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 121292 | 0.7 | 0.504504 |
Target: 5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3' miRNA: 3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 8246 | 0.7 | 0.504504 |
Target: 5'- gGGCCGggGguccgcccccgGGGGCGccGGgGGCCGGc -3' miRNA: 3'- gUCGGCaaCa----------CUCCGCu-CCgCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 12306 | 0.7 | 0.504504 |
Target: 5'- -cGCUGU--UGAGGCgGAGGuuGCCGGg -3' miRNA: 3'- guCGGCAacACUCCG-CUCCgcCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 117351 | 0.7 | 0.502645 |
Target: 5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3' miRNA: 3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 30079 | 0.7 | 0.464355 |
Target: 5'- gCGGCCGggcccucgcgGGGGCGcGGCcccGGCCGGg -3' miRNA: 3'- -GUCGGCaaca------CUCCGCuCCG---CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 18443 | 0.7 | 0.486057 |
Target: 5'- gGGCCGcguccgGUGGcgcGGCGGGGgGGCgCGGc -3' miRNA: 3'- gUCGGCaa----CACU---CCGCUCCgCCG-GCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 13389 | 0.7 | 0.476954 |
Target: 5'- -cGCCGggGgucgGGGGCGcGGCgggggugacGGCCGGa -3' miRNA: 3'- guCGGCaaCa---CUCCGCuCCG---------CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 154823 | 0.7 | 0.495241 |
Target: 5'- -uGCUGcgGcGGGGCGGaGCGGCCGGc -3' miRNA: 3'- guCGGCaaCaCUCCGCUcCGCCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 138667 | 0.7 | 0.476954 |
Target: 5'- gGGCC--UGUGGGGCGAGGgGuGUgGGu -3' miRNA: 3'- gUCGGcaACACUCCGCUCCgC-CGgCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 15768 | 0.69 | 0.538429 |
Target: 5'- uCAGCCGggcccuGGGCGAGGacgacgccucgaaGGCCGGc -3' miRNA: 3'- -GUCGGCaacac-UCCGCUCCg------------CCGGCC- -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 137602 | 0.69 | 0.532717 |
Target: 5'- -cGCCGgccugGUGAucuuCGAGGCGGCCGu -3' miRNA: 3'- guCGGCaa---CACUcc--GCUCCGCCGGCc -5' |
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21702 | 5' | -60.9 | NC_004812.1 | + | 46271 | 0.69 | 0.532717 |
Target: 5'- gGGCgCGgcagGAuccGcGCGGGGCGGCCGGa -3' miRNA: 3'- gUCG-GCaacaCU---C-CGCUCCGCCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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