miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 122303 0.71 0.441428
Target:  5'- gGGCCGcc--GGGGgGAGGCGGgCGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgCUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 40129 0.71 0.450171
Target:  5'- cCGGCCccuccgGaGGGGcCGGGGUGGCCGGc -3'
miRNA:   3'- -GUCGGcaa---CaCUCC-GCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 153431 0.71 0.450171
Target:  5'- aAGCCGgcggUGagucgGGGGCGGGG-GGCgCGGg -3'
miRNA:   3'- gUCGGCa---ACa----CUCCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 48142 0.71 0.450171
Target:  5'- uGGCCGUccucGAGGCGcGGCG-CCGGg -3'
miRNA:   3'- gUCGGCAaca-CUCCGCuCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 72031 0.71 0.450171
Target:  5'- gGGCCGggacggucUGggGGGGCGGGG-GGUCGGg -3'
miRNA:   3'- gUCGGCa-------ACa-CUCCGCUCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 122530 0.71 0.450171
Target:  5'- aAGCCGgcgGUGAgucgggGGCGGGG-GGCgCGGg -3'
miRNA:   3'- gUCGGCaa-CACU------CCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 100115 0.7 0.459008
Target:  5'- gCGGgCGggGgaggggagggGAGGCGuGGCGGCgCGGg -3'
miRNA:   3'- -GUCgGCaaCa---------CUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 30079 0.7 0.464355
Target:  5'- gCGGCCGggcccucgcgGGGGCGcGGCcccGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca------CUCCGCuCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155588 0.7 0.464355
Target:  5'- gCGGCCGggcccucgcgGGGGCGcGGCcccGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca------CUCCGCuCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 62730 0.7 0.467937
Target:  5'- aGGCCGagGUGGaccGGCGgcuGGGCuGCCGGg -3'
miRNA:   3'- gUCGGCaaCACU---CCGC---UCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 92231 0.7 0.467937
Target:  5'- gGGCCGggagagggUGUGGccuGGCGGGGCGGa-GGa -3'
miRNA:   3'- gUCGGCa-------ACACU---CCGCUCCGCCggCC- -5'
21702 5' -60.9 NC_004812.1 + 5620 0.7 0.476954
Target:  5'- gGGCCG----GAGGCGGcucGGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCU---CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 36521 0.7 0.476954
Target:  5'- gGGCCG----GAGGCGGcucGGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCU---CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 138667 0.7 0.476954
Target:  5'- gGGCC--UGUGGGGCGAGGgGuGUgGGu -3'
miRNA:   3'- gUCGGcaACACUCCGCUCCgC-CGgCC- -5'
21702 5' -60.9 NC_004812.1 + 13389 0.7 0.476954
Target:  5'- -cGCCGggGgucgGGGGCGcGGCgggggugacGGCCGGa -3'
miRNA:   3'- guCGGCaaCa---CUCCGCuCCG---------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 18443 0.7 0.486057
Target:  5'- gGGCCGcguccgGUGGcgcGGCGGGGgGGCgCGGc -3'
miRNA:   3'- gUCGGCaa----CACU---CCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 40529 0.7 0.486057
Target:  5'- gGGCgCGggG-GAGGgGAGGgGGCgCGGg -3'
miRNA:   3'- gUCG-GCaaCaCUCCgCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 40568 0.7 0.486057
Target:  5'- gGGCgCGggG-GAGGgGAGGgGGCgCGGg -3'
miRNA:   3'- gUCG-GCaaCaCUCCgCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 39833 0.7 0.486057
Target:  5'- gCGGCCGc-GUGcccguAGGCGgugcGGGgGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCAC-----UCCGC----UCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 101893 0.7 0.486057
Target:  5'- -cGCCGggcuagGgcgccccGAGGCGcGGCGGUCGGg -3'
miRNA:   3'- guCGGCaa----Ca------CUCCGCuCCGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.