miRNA display CGI


Results 101 - 120 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 40706 0.7 0.486057
Target:  5'- gGGCgCGggG-GAGGgGAGGgGGCgCGGg -3'
miRNA:   3'- gUCG-GCaaCaCUCCgCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 83191 0.7 0.495241
Target:  5'- gAGCuCGcgGcggGAGGCGcGGCGGCCGc -3'
miRNA:   3'- gUCG-GCaaCa--CUCCGCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 154823 0.7 0.495241
Target:  5'- -uGCUGcgGcGGGGCGGaGCGGCCGGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 72151 0.7 0.495241
Target:  5'- gGGCCGggGgaggcgggcuUGGGGgGAGggugcuggguGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaC----------ACUCCgCUC----------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 142544 0.7 0.495241
Target:  5'- -cGUCGUgaucgacGAGGCGGGGCuucugGGCCGGc -3'
miRNA:   3'- guCGGCAaca----CUCCGCUCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 123922 0.7 0.495241
Target:  5'- -uGCUGcgGcGGGGCGGaGCGGCCGGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 117351 0.7 0.502645
Target:  5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 148252 0.7 0.502645
Target:  5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 152193 0.7 0.504504
Target:  5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3'
miRNA:   3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 12306 0.7 0.504504
Target:  5'- -cGCUGU--UGAGGCgGAGGuuGCCGGg -3'
miRNA:   3'- guCGGCAacACUCCG-CUCCgcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 8246 0.7 0.504504
Target:  5'- gGGCCGggGguccgcccccgGGGGCGccGGgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa----------CUCCGCu-CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121292 0.7 0.504504
Target:  5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3'
miRNA:   3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 88939 0.7 0.504504
Target:  5'- uGGCCGccggUGgcGAGGaGGGcGCGGCCGGc -3'
miRNA:   3'- gUCGGCa---ACa-CUCCgCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 39147 0.7 0.504504
Target:  5'- gGGCCGggGguccgcccccgGGGGCGccGGgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa----------CUCCGCu-CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 120877 0.7 0.504504
Target:  5'- -cGCUGUaGcGGGGCGGGGCGGagacgCGGg -3'
miRNA:   3'- guCGGCAaCaCUCCGCUCCGCCg----GCC- -5'
21702 5' -60.9 NC_004812.1 + 21902 0.7 0.504504
Target:  5'- gGGUCGc--UGAGGcCGAGGCGGUCGu -3'
miRNA:   3'- gUCGGCaacACUCC-GCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 124173 0.7 0.504504
Target:  5'- -uGCCGguacGUGGGGCGgcugGGcGCGGCCGc -3'
miRNA:   3'- guCGGCaa--CACUCCGC----UC-CGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 77935 0.69 0.51384
Target:  5'- gCAGCgGUUcgggGUGGGuCGGGGUGGCgGGg -3'
miRNA:   3'- -GUCGgCAA----CACUCcGCUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 154879 0.69 0.51384
Target:  5'- gGGCCGcg--GAGGCGcGcGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCuC-CgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 60898 0.69 0.51384
Target:  5'- aAGUCGgcgGUGGGGCGcggcAGGCGGCa-- -3'
miRNA:   3'- gUCGGCaa-CACUCCGC----UCCGCCGgcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.