miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 60898 0.69 0.51384
Target:  5'- aAGUCGgcgGUGGGGCGcggcAGGCGGCa-- -3'
miRNA:   3'- gUCGGCaa-CACUCCGC----UCCGCCGgcc -5'
21702 5' -60.9 NC_004812.1 + 128720 0.69 0.523246
Target:  5'- gCAGCgGgcccGAGGCGcgcGGCGGCCGa -3'
miRNA:   3'- -GUCGgCaacaCUCCGCu--CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 47720 0.69 0.523246
Target:  5'- cCGGCCGgc-----GCGAGGCGGCgGGg -3'
miRNA:   3'- -GUCGGCaacacucCGCUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 77102 0.69 0.523246
Target:  5'- gCGGCgaugaCGUUGcccccgcgGGGGCGGuGGCGGUCGGu -3'
miRNA:   3'- -GUCG-----GCAACa-------CUCCGCU-CCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 51887 0.69 0.523246
Target:  5'- gCGGCCGU---GGGcGCGuGGCGGCCa- -3'
miRNA:   3'- -GUCGGCAacaCUC-CGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 46271 0.69 0.532717
Target:  5'- gGGCgCGgcagGAuccGcGCGGGGCGGCCGGa -3'
miRNA:   3'- gUCG-GCaacaCU---C-CGCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 137602 0.69 0.532717
Target:  5'- -cGCCGgccugGUGAucuuCGAGGCGGCCGu -3'
miRNA:   3'- guCGGCaa---CACUcc--GCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 15768 0.69 0.538429
Target:  5'- uCAGCCGggcccuGGGCGAGGacgacgccucgaaGGCCGGc -3'
miRNA:   3'- -GUCGGCaacac-UCCGCUCCg------------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 59641 0.69 0.54225
Target:  5'- gCAGCCGcaugaggguggUGUG-GGCGcAGGCGuGCCGc -3'
miRNA:   3'- -GUCGGCa----------ACACuCCGC-UCCGC-CGGCc -5'
21702 5' -60.9 NC_004812.1 + 71031 0.69 0.54225
Target:  5'- uCGG-CGUUGcguucggGuGGCGGGGCGGCCa- -3'
miRNA:   3'- -GUCgGCAACa------CuCCGCUCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 117263 0.69 0.551838
Target:  5'- aGGCCGUgcugGGGGCguucGAGcGCGGCaCGGc -3'
miRNA:   3'- gUCGGCAaca-CUCCG----CUC-CGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 16218 0.69 0.551838
Target:  5'- gGGCCGcgcgccgGAGGCgGAGcCGGCCGGc -3'
miRNA:   3'- gUCGGCaaca---CUCCG-CUCcGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 36376 0.69 0.551838
Target:  5'- gCAGCCGaagacGGGCaGGGGCugGGCCGGg -3'
miRNA:   3'- -GUCGGCaacacUCCG-CUCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 45187 0.69 0.551838
Target:  5'- gGGCCGgaGcccGGCGGcGCGGCCGGc -3'
miRNA:   3'- gUCGGCaaCacuCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 76927 0.69 0.561476
Target:  5'- gAGCacccc-GAGGCGAGGUGGgCGGg -3'
miRNA:   3'- gUCGgcaacaCUCCGCUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 29746 0.69 0.561476
Target:  5'- gGGCCGagGgGGGGCGcGGCGGacgccaaaCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCuCCGCC--------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 155254 0.69 0.561476
Target:  5'- gGGCCGagGgGGGGCGcGGCGGacgccaaaCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCuCCGCC--------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 95518 0.69 0.561476
Target:  5'- -cGCCGccucGAccccGGCGGGGCGGcCCGGg -3'
miRNA:   3'- guCGGCaacaCU----CCGCUCCGCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 41033 0.68 0.571161
Target:  5'- -cGCCGUg--GGGGUGGGGUGGCg-- -3'
miRNA:   3'- guCGGCAacaCUCCGCUCCGCCGgcc -5'
21702 5' -60.9 NC_004812.1 + 68180 0.68 0.571161
Target:  5'- gCGGCCGc----GGGCgGGGGCGcGCCGGa -3'
miRNA:   3'- -GUCGGCaacacUCCG-CUCCGC-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.