miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 5011 0.66 0.698341
Target:  5'- gCGGgCGggGgcgGcAGGUGGGGCGGCaggCGGg -3'
miRNA:   3'- -GUCgGCaaCa--C-UCCGCUCCGCCG---GCC- -5'
21702 5' -60.9 NC_004812.1 + 72149 0.66 0.693503
Target:  5'- gAGCCGaacgaacccagaggcGGGCGAGGCGGacCCGGa -3'
miRNA:   3'- gUCGGCaacac----------UCCGCUCCGCC--GGCC- -5'
21702 5' -60.9 NC_004812.1 + 1972 0.66 0.688653
Target:  5'- -cGCCGggGggagGGGGggaGGGGUGGCgGGu -3'
miRNA:   3'- guCGGCaaCa---CUCCg--CUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 62139 0.66 0.688653
Target:  5'- aGGCCGgaucgGcGGCGcGGGCGGCCu- -3'
miRNA:   3'- gUCGGCaaca-CuCCGC-UCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 61202 0.66 0.688653
Target:  5'- uGGCgGggGaacgauGGGCGGGGgGGCUGGg -3'
miRNA:   3'- gUCGgCaaCac----UCCGCUCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 5970 0.66 0.688653
Target:  5'- aGGCCGcgGgGGGGCGAGucGCGgggugguaggcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCUC--CGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 3211 0.66 0.685738
Target:  5'- gCAGCgGgcccGAGGCGcgcggcgggccgaaGGcGCGGCCGGa -3'
miRNA:   3'- -GUCGgCaacaCUCCGC--------------UC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 115256 0.66 0.685738
Target:  5'- cCGGUgGUgcgugGuUGAGGCGuAGGCcagcuccaucccgcGGCCGGa -3'
miRNA:   3'- -GUCGgCAa----C-ACUCCGC-UCCG--------------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 31987 0.66 0.684766
Target:  5'- cCGGCCGcgGcagguccgccacgGAGGCGGGGCcgaaccGGCCGc -3'
miRNA:   3'- -GUCGGCaaCa------------CUCCGCUCCG------CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 29872 0.67 0.681846
Target:  5'- aAGCCGUccgccaggaaccccgGGGGCcGGGCcgGGCCGGg -3'
miRNA:   3'- gUCGGCAaca------------CUCCGcUCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155380 0.67 0.681846
Target:  5'- aAGCCGUccgccaggaaccccgGGGGCcGGGCcgGGCCGGg -3'
miRNA:   3'- gUCGGCAaca------------CUCCGcUCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 13103 0.67 0.678923
Target:  5'- gCGGCCGacGgcgGAGGCGuguagauGCGGCuCGGg -3'
miRNA:   3'- -GUCGGCaaCa--CUCCGCuc-----CGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 122122 0.67 0.678923
Target:  5'- gGGCCag-GgccuGGGCGAGGaCGGCCuGGg -3'
miRNA:   3'- gUCGGcaaCac--UCCGCUCC-GCCGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 79030 0.67 0.678923
Target:  5'- uCGGCUGgc-UGGGGuCGGGggccgcggcccaGCGGCCGGa -3'
miRNA:   3'- -GUCGGCaacACUCC-GCUC------------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 72340 0.67 0.678923
Target:  5'- gGGCCGcgGggggGAGGgGGGGCGGggGGu -3'
miRNA:   3'- gUCGGCaaCa---CUCCgCUCCGCCggCC- -5'
21702 5' -60.9 NC_004812.1 + 98782 0.67 0.678923
Target:  5'- aGGCCucGUaGUGGGGCGAcGGacccCGGuCCGGa -3'
miRNA:   3'- gUCGG--CAaCACUCCGCU-CC----GCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 153023 0.67 0.678923
Target:  5'- gGGCCag-GgccuGGGCGAGGaCGGCCuGGg -3'
miRNA:   3'- gUCGGcaaCac--UCCGCUCC-GCCGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 105663 0.67 0.678923
Target:  5'- --cCCGgcGUGGuGGUGGGGCGcguacGCCGGg -3'
miRNA:   3'- gucGGCaaCACU-CCGCUCCGC-----CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 61438 0.67 0.669156
Target:  5'- cCGGCCGUc-UGAGGgcccgcCGAGacCGGCCGGg -3'
miRNA:   3'- -GUCGGCAacACUCC------GCUCc-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 72845 0.67 0.669156
Target:  5'- gCAGUCGcUGUGGGcGCGcuGGCGucccuggcggcaGCCGGg -3'
miRNA:   3'- -GUCGGCaACACUC-CGCu-CCGC------------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.