miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 61438 0.67 0.669156
Target:  5'- cCGGCCGUc-UGAGGgcccgcCGAGacCGGCCGGg -3'
miRNA:   3'- -GUCGGCAacACUCC------GCUCc-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 107306 0.67 0.669156
Target:  5'- gGGCCu---UGGGGCGuuccggggGGGCGGCCGcGg -3'
miRNA:   3'- gUCGGcaacACUCCGC--------UCCGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 46823 0.67 0.669156
Target:  5'- gCGGCCGUcGgcccGGuCGAGGgGGCCGu -3'
miRNA:   3'- -GUCGGCAaCacu-CC-GCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 72845 0.67 0.669156
Target:  5'- gCAGUCGcUGUGGGcGCGcuGGCGucccuggcggcaGCCGGg -3'
miRNA:   3'- -GUCGGCaACACUC-CGCu-CCGC------------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 12806 0.67 0.663283
Target:  5'- aCGGCCGUcgggccgauggggaGUG-GGCGGGGaagGGCCGa -3'
miRNA:   3'- -GUCGGCAa-------------CACuCCGCUCCg--CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 6793 0.67 0.659362
Target:  5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3'
miRNA:   3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 92493 0.67 0.659362
Target:  5'- uGGCCGUc--GAGGC--GGCGGcCCGGc -3'
miRNA:   3'- gUCGGCAacaCUCCGcuCCGCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 19756 0.67 0.659362
Target:  5'- cCAGCCcg-GUGcgggggucccAGGCGAcGCGcGCCGGg -3'
miRNA:   3'- -GUCGGcaaCAC----------UCCGCUcCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 106555 0.67 0.659362
Target:  5'- -cGCCGggGagcUGAGGgagGAGGCgcccgGGCCGGg -3'
miRNA:   3'- guCGGCaaC---ACUCCg--CUCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 37694 0.67 0.659362
Target:  5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3'
miRNA:   3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 64397 0.67 0.659362
Target:  5'- cCGGCCcc---GAGGCGAGGCugagggcgagGGCCGa -3'
miRNA:   3'- -GUCGGcaacaCUCCGCUCCG----------CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 11341 0.67 0.659362
Target:  5'- gGGCCGacggUGUG-GGCucgacgggaggGGGGCGGuaCCGGg -3'
miRNA:   3'- gUCGGCa---ACACuCCG-----------CUCCGCC--GGCC- -5'
21702 5' -60.9 NC_004812.1 + 10396 0.67 0.659362
Target:  5'- gGGCCGgc--GGGGUGAGGgGGaucaCGGa -3'
miRNA:   3'- gUCGGCaacaCUCCGCUCCgCCg---GCC- -5'
21702 5' -60.9 NC_004812.1 + 36449 0.67 0.659362
Target:  5'- gCGGCCGcgUUGUcGAGgaGCGGGGgGGCCc- -3'
miRNA:   3'- -GUCGGC--AACA-CUC--CGCUCCgCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 76515 0.67 0.653476
Target:  5'- aGGCCGUcgacggcugccUGgucGAgGGCGGGGCguggacgcgggccucGGCCGGc -3'
miRNA:   3'- gUCGGCA-----------ACa--CU-CCGCUCCG---------------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 139411 0.67 0.649548
Target:  5'- cCGGCCGcgaacGAcacCGGGGCGGCCGGu -3'
miRNA:   3'- -GUCGGCaaca-CUcc-GCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 118408 0.67 0.649548
Target:  5'- gGGCCGggcgacGGGCGAcaGGCGGCCu- -3'
miRNA:   3'- gUCGGCaacac-UCCGCU--CCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 83203 0.67 0.649548
Target:  5'- gCGGgCGUcGUGAGGCc-GGCG-CCGGg -3'
miRNA:   3'- -GUCgGCAaCACUCCGcuCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 149309 0.67 0.649548
Target:  5'- gGGCCGggcgacGGGCGAcaGGCGGCCu- -3'
miRNA:   3'- gUCGGCaacac-UCCGCU--CCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 98225 0.67 0.649548
Target:  5'- gCGGCCGccUGgucuccGCGGGGCGGCgCGGc -3'
miRNA:   3'- -GUCGGCa-ACacuc--CGCUCCGCCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.