miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 71039 0.67 0.649548
Target:  5'- gAGCCGc--UGGGGa-GGGCGGCCGc -3'
miRNA:   3'- gUCGGCaacACUCCgcUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 139411 0.67 0.649548
Target:  5'- cCGGCCGcgaacGAcacCGGGGCGGCCGGu -3'
miRNA:   3'- -GUCGGCaaca-CUcc-GCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 118408 0.67 0.649548
Target:  5'- gGGCCGggcgacGGGCGAcaGGCGGCCu- -3'
miRNA:   3'- gUCGGCaacac-UCCGCU--CCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 30378 0.67 0.647583
Target:  5'- gCGGCCGggucgGggcucuccuccgGGGGCGcGGCGGCCu- -3'
miRNA:   3'- -GUCGGCaa---Ca-----------CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 145025 0.67 0.646601
Target:  5'- -cGCCG-UGUccccggcgagcgcgGAGGCgGGGGCGGCggCGGa -3'
miRNA:   3'- guCGGCaACA--------------CUCCG-CUCCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 17595 0.67 0.645618
Target:  5'- aCAGCagacugcGGGCGAGGCGGgcCCGGg -3'
miRNA:   3'- -GUCGgcaacacUCCGCUCCGCC--GGCC- -5'
21702 5' -60.9 NC_004812.1 + 18527 0.67 0.639721
Target:  5'- aCAGCCGcgGaacGAGGCGGcgcauGGCGGCgCGu -3'
miRNA:   3'- -GUCGGCaaCa--CUCCGCU-----CCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 107560 0.67 0.639721
Target:  5'- uGGCCGcgGcucagGaAGGCGGcGGCGGCgCGGu -3'
miRNA:   3'- gUCGGCaaCa----C-UCCGCU-CCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 123577 0.67 0.639721
Target:  5'- gGGCCGccg-GGGGC--GGCGGCCGa -3'
miRNA:   3'- gUCGGCaacaCUCCGcuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 152640 0.67 0.639721
Target:  5'- gGGCCGgcGcGcGGCGGGGgGgcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCuCCGCUCCgC--CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 77230 0.67 0.639721
Target:  5'- gCGGCCGacgcgggggUGUGGGGCGcugcccucgcggGGGCGccGCUGGc -3'
miRNA:   3'- -GUCGGCa--------ACACUCCGC------------UCCGC--CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 95483 0.67 0.639721
Target:  5'- uGGuuGUUGUGcgcGGGCGccGGCGcGCCGcGg -3'
miRNA:   3'- gUCggCAACAC---UCCGCu-CCGC-CGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 85989 0.67 0.639721
Target:  5'- -cGCUGgaaaggggaggUGUGGGGUG-GGUGuGCCGGg -3'
miRNA:   3'- guCGGCa----------ACACUCCGCuCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 50640 0.67 0.639721
Target:  5'- gGGCUGUgg-GGGGCGGGGC--CCGGc -3'
miRNA:   3'- gUCGGCAacaCUCCGCUCCGccGGCC- -5'
21702 5' -60.9 NC_004812.1 + 58535 0.67 0.638738
Target:  5'- -uGuuGUUG-GGGGCGAGGUugacgaaguucgaGGCCGc -3'
miRNA:   3'- guCggCAACaCUCCGCUCCG-------------CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 17935 0.67 0.636771
Target:  5'- cCGGUCGggGgggGAgagggggucgcccgGGCGAcGGCGGCCGu -3'
miRNA:   3'- -GUCGGCaaCa--CU--------------CCGCU-CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 116452 0.67 0.629888
Target:  5'- gCGGCCGUcgcgcUGUGGGuCGcGGCGGCgGa -3'
miRNA:   3'- -GUCGGCA-----ACACUCcGCuCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 17412 0.67 0.628905
Target:  5'- gGGCgGggGUGgugguggGGGCGGggguGGCGGCCGu -3'
miRNA:   3'- gUCGgCaaCAC-------UCCGCU----CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 46000 0.67 0.628905
Target:  5'- -cGCCGUUGcG-GGCGGGGCGuggaagugaaaccGCCGcGg -3'
miRNA:   3'- guCGGCAACaCuCCGCUCCGC-------------CGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 139542 0.68 0.620058
Target:  5'- -cGCCacgG-GGGGCGcguccgcGGCGGCCGGg -3'
miRNA:   3'- guCGGcaaCaCUCCGCu------CCGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.