miRNA display CGI


Results 141 - 160 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 37727 0.68 0.620058
Target:  5'- gGGCUGg-GUGGGGgGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCACUCCgCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 106774 0.68 0.620058
Target:  5'- gGGgCGgcGUcGGGCGGGGCGcGCgGGa -3'
miRNA:   3'- gUCgGCaaCAcUCCGCUCCGC-CGgCC- -5'
21702 5' -60.9 NC_004812.1 + 83993 0.68 0.620058
Target:  5'- cCGGCCcuccUUGgGGGGCGucGCGGcCCGGc -3'
miRNA:   3'- -GUCGGc---AACaCUCCGCucCGCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 59593 0.68 0.620058
Target:  5'- -cGCCGaUG-GGGGCGcGGGCGGCgcucgcgaacCGGg -3'
miRNA:   3'- guCGGCaACaCUCCGC-UCCGCCG----------GCC- -5'
21702 5' -60.9 NC_004812.1 + 35524 0.68 0.620058
Target:  5'- uGGCCcuua-GGGGCGGGGgGGCgGGa -3'
miRNA:   3'- gUCGGcaacaCUCCGCUCCgCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 137964 0.68 0.620058
Target:  5'- uGGCCGUcUGcgGAGaCgGGGGCGGCCGc -3'
miRNA:   3'- gUCGGCA-ACa-CUCcG-CUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 73879 0.68 0.620058
Target:  5'- cCGGCCGUUGccgcccugcUGggcucGGGCGAGccgccguCGGCCGGc -3'
miRNA:   3'- -GUCGGCAAC---------AC-----UCCGCUCc------GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 25343 0.68 0.620058
Target:  5'- cCAGCCGgcgGUGGgcGGCGAccacgGGCucGCCGGc -3'
miRNA:   3'- -GUCGGCaa-CACU--CCGCU-----CCGc-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 78928 0.68 0.620058
Target:  5'- -cGCUGUUGUuggaccggcuGGGGUcgGGGGUGcGCCGGg -3'
miRNA:   3'- guCGGCAACA----------CUCCG--CUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 139542 0.68 0.620058
Target:  5'- -cGCCacgG-GGGGCGcguccgcGGCGGCCGGg -3'
miRNA:   3'- guCGGcaaCaCUCCGCu------CCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 6826 0.68 0.620058
Target:  5'- gGGCUGg-GUGGGGgGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCACUCCgCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 4623 0.68 0.620058
Target:  5'- uGGCCcuua-GGGGCGGGGgGGCgGGa -3'
miRNA:   3'- gUCGGcaacaCUCCGCUCCgCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 139789 0.68 0.619075
Target:  5'- gCGGCCGccGUcuccuccucggcgGGGGuCGAGGUGGCCa- -3'
miRNA:   3'- -GUCGGCaaCA-------------CUCC-GCUCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 19670 0.68 0.610235
Target:  5'- -cGCCGggGgccgcGGGGaCGAgGGCGGcCCGGu -3'
miRNA:   3'- guCGGCaaCa----CUCC-GCU-CCGCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 124640 0.68 0.610235
Target:  5'- gCGGCCGggcagGAGGaGAccGCGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca-CUCCgCUc-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 125317 0.68 0.610235
Target:  5'- -cGCgCGUgg-GGGGCGGGGCGccgcgggaugcGCCGGc -3'
miRNA:   3'- guCG-GCAacaCUCCGCUCCGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 105654 0.68 0.610235
Target:  5'- aGGCUGgcGUccaGAGGgGAcgGGCGGCCGcGg -3'
miRNA:   3'- gUCGGCaaCA---CUCCgCU--CCGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 155541 0.68 0.610235
Target:  5'- gCGGCCGggcagGAGGaGAccGCGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca-CUCCgCUc-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 25832 0.68 0.610235
Target:  5'- uCGGCCGagcGcGGGGcCGcGGCGGCCGa -3'
miRNA:   3'- -GUCGGCaa-CaCUCC-GCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 156218 0.68 0.610235
Target:  5'- -cGCgCGUgg-GGGGCGGGGCGccgcgggaugcGCCGGc -3'
miRNA:   3'- guCG-GCAacaCUCCGCUCCGC-----------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.