miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 35524 0.68 0.620058
Target:  5'- uGGCCcuua-GGGGCGGGGgGGCgGGa -3'
miRNA:   3'- gUCGGcaacaCUCCGCUCCgCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 35680 0.68 0.571161
Target:  5'- gCGGUgGggGagGGGGCGGGGCgagGGCUGGu -3'
miRNA:   3'- -GUCGgCaaCa-CUCCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 35996 0.68 0.600428
Target:  5'- cCGGCCGgg--GAGGCGGGGgagucuggGGuCCGGg -3'
miRNA:   3'- -GUCGGCaacaCUCCGCUCCg-------CC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 36376 0.69 0.551838
Target:  5'- gCAGCCGaagacGGGCaGGGGCugGGCCGGg -3'
miRNA:   3'- -GUCGGCaacacUCCG-CUCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 36449 0.67 0.659362
Target:  5'- gCGGCCGcgUUGUcGAGgaGCGGGGgGGCCc- -3'
miRNA:   3'- -GUCGGC--AACA-CUC--CGCUCCgCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 36521 0.7 0.476954
Target:  5'- gGGCCG----GAGGCGGcucGGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCU---CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 36780 0.68 0.587712
Target:  5'- gGGCCGg---GGGGCGcGGGCGcgggcucaggggccGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGC-UCCGC--------------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 36871 0.66 0.702202
Target:  5'- aGGCCGcgGgGGGGCGAguacgcggggugguaGGCG-CCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCU---------------CCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 37000 0.71 0.432782
Target:  5'- gGGUCGgcGggaacgGGGGCGAcGGCGGCgGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCU-CCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 37230 0.66 0.745848
Target:  5'- gCGGCCGUUGUGcagcauGGCGuuGaGCGuGuuGGc -3'
miRNA:   3'- -GUCGGCAACACu-----CCGCu-C-CGC-CggCC- -5'
21702 5' -60.9 NC_004812.1 + 37427 0.66 0.717554
Target:  5'- gAGCaGggG-GGGGCGGGG-GGCCGa -3'
miRNA:   3'- gUCGgCaaCaCUCCGCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 37516 0.66 0.727064
Target:  5'- -uGCgUGUUGUGGaGC-AGGCGGCCGu -3'
miRNA:   3'- guCG-GCAACACUcCGcUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 37694 0.67 0.659362
Target:  5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3'
miRNA:   3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 37727 0.68 0.620058
Target:  5'- gGGCUGg-GUGGGGgGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCACUCCgCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 38411 0.66 0.705092
Target:  5'- gGGCCGgagcgaaaggaggGAGGgGGGGCGGCgaugcgCGGg -3'
miRNA:   3'- gUCGGCaaca---------CUCCgCUCCGCCG------GCC- -5'
21702 5' -60.9 NC_004812.1 + 38540 0.73 0.32295
Target:  5'- gCGGCCGggGUcGGGGCGcgaagcugcGGGCccgcgGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCA-CUCCGC---------UCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 38844 0.68 0.599448
Target:  5'- gCGGCCGg---GGGGCGcguccggGGGgGGCCGa -3'
miRNA:   3'- -GUCGGCaacaCUCCGC-------UCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 39091 0.77 0.204284
Target:  5'- gGGCCGggGUccGGcCGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCAcuCC-GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 39147 0.7 0.504504
Target:  5'- gGGCCGggGguccgcccccgGGGGCGccGGgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa----------CUCCGCu-CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 39554 0.68 0.580884
Target:  5'- gGGCCGUcgc-GGGCGAuGaGCGGCUGGu -3'
miRNA:   3'- gUCGGCAacacUCCGCU-C-CGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.