miRNA display CGI


Results 101 - 120 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 39833 0.7 0.486057
Target:  5'- gCGGCCGc-GUGcccguAGGCGgugcGGGgGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCAC-----UCCGC----UCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 40062 0.73 0.330066
Target:  5'- gCGGCCGcucGUGcgcuuuuccGGGCGgcgggcggcGGGCGGCCGGg -3'
miRNA:   3'- -GUCGGCaa-CAC---------UCCGC---------UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 40129 0.71 0.450171
Target:  5'- cCGGCCccuccgGaGGGGcCGGGGUGGCCGGc -3'
miRNA:   3'- -GUCGGcaa---CaCUCC-GCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 40529 0.7 0.486057
Target:  5'- gGGCgCGggG-GAGGgGAGGgGGCgCGGg -3'
miRNA:   3'- gUCG-GCaaCaCUCCgCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 40568 0.7 0.486057
Target:  5'- gGGCgCGggG-GAGGgGAGGgGGCgCGGg -3'
miRNA:   3'- gUCG-GCaaCaCUCCgCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 40706 0.7 0.486057
Target:  5'- gGGCgCGggG-GAGGgGAGGgGGCgCGGg -3'
miRNA:   3'- gUCG-GCaaCaCUCCgCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 41033 0.68 0.571161
Target:  5'- -cGCCGUg--GGGGUGGGGUGGCg-- -3'
miRNA:   3'- guCGGCAacaCUCCGCUCCGCCGgcc -5'
21702 5' -60.9 NC_004812.1 + 44009 0.66 0.736497
Target:  5'- uGGCCGagGccagcagGAGGCuccGGCGGCCGc -3'
miRNA:   3'- gUCGGCaaCa------CUCCGcu-CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 44192 0.72 0.359673
Target:  5'- gCGGCgGggGUGGGGCucGGcGGCGGCgCGGa -3'
miRNA:   3'- -GUCGgCaaCACUCCG--CU-CCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 45187 0.69 0.551838
Target:  5'- gGGCCGgaGcccGGCGGcGCGGCCGGc -3'
miRNA:   3'- gUCGGCaaCacuCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 46000 0.67 0.628905
Target:  5'- -cGCCGUUGcG-GGCGGGGCGuggaagugaaaccGCCGcGg -3'
miRNA:   3'- guCGGCAACaCuCCGCUCCGC-------------CGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 46271 0.69 0.532717
Target:  5'- gGGCgCGgcagGAuccGcGCGGGGCGGCCGGa -3'
miRNA:   3'- gUCG-GCaacaCU---C-CGCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 46643 0.73 0.344641
Target:  5'- aGGUCGaUGuUGGGGUGGGGUccguGGCCGGg -3'
miRNA:   3'- gUCGGCaAC-ACUCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 46823 0.67 0.669156
Target:  5'- gCGGCCGUcGgcccGGuCGAGGgGGCCGu -3'
miRNA:   3'- -GUCGGCAaCacu-CC-GCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 47720 0.69 0.523246
Target:  5'- cCGGCCGgc-----GCGAGGCGGCgGGg -3'
miRNA:   3'- -GUCGGCaacacucCGCUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 48142 0.71 0.450171
Target:  5'- uGGCCGUccucGAGGCGcGGCG-CCGGg -3'
miRNA:   3'- gUCGGCAaca-CUCCGCuCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 50640 0.67 0.639721
Target:  5'- gGGCUGUgg-GGGGCGGGGC--CCGGc -3'
miRNA:   3'- gUCGGCAacaCUCCGCUCCGccGGCC- -5'
21702 5' -60.9 NC_004812.1 + 51887 0.69 0.523246
Target:  5'- gCGGCCGU---GGGcGCGuGGCGGCCa- -3'
miRNA:   3'- -GUCGGCAacaCUC-CGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 52222 0.72 0.378308
Target:  5'- -cGCCGUcuguuucgcccucggUGgggGAGGUGcGGGCGGCUGGu -3'
miRNA:   3'- guCGGCA---------------ACa--CUCCGC-UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 52309 0.68 0.571161
Target:  5'- cCGGCCGgcGUcGGGGUG-GGCGGCa-- -3'
miRNA:   3'- -GUCGGCaaCA-CUCCGCuCCGCCGgcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.