miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 54128 0.68 0.610235
Target:  5'- -cGCCGUaccggagggggGUGGGGUGGgcucccGGCGGCgGGa -3'
miRNA:   3'- guCGGCAa----------CACUCCGCU------CCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 54382 0.66 0.727064
Target:  5'- uGGCCGUc---GGGCGcccgcGGGCacGGCCGGg -3'
miRNA:   3'- gUCGGCAacacUCCGC-----UCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 54608 0.66 0.736497
Target:  5'- uGGCCGc---GGGGaCGGGcGgGGCCGGa -3'
miRNA:   3'- gUCGGCaacaCUCC-GCUC-CgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 54660 0.66 0.727064
Target:  5'- -cGCCGccGcGGGGCccaGCGGCCGGg -3'
miRNA:   3'- guCGGCaaCaCUCCGcucCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 58402 0.71 0.424235
Target:  5'- gCGGCCGccgccUG-GAGGCugggGGGGCGGCgGGa -3'
miRNA:   3'- -GUCGGCa----ACaCUCCG----CUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 58535 0.67 0.638738
Target:  5'- -uGuuGUUG-GGGGCGAGGUugacgaaguucgaGGCCGc -3'
miRNA:   3'- guCggCAACaCUCCGCUCCG-------------CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 58953 0.66 0.707977
Target:  5'- uGGCCuGccGUGAGGCu-GGgGGCCGa -3'
miRNA:   3'- gUCGG-CaaCACUCCGcuCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 59593 0.68 0.620058
Target:  5'- -cGCCGaUG-GGGGCGcGGGCGGCgcucgcgaacCGGg -3'
miRNA:   3'- guCGGCaACaCUCCGC-UCCGCCG----------GCC- -5'
21702 5' -60.9 NC_004812.1 + 59621 0.77 0.185631
Target:  5'- aGGgCGUggggGUGGGGCGGGaGCGGCCGcGg -3'
miRNA:   3'- gUCgGCAa---CACUCCGCUC-CGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 59641 0.69 0.54225
Target:  5'- gCAGCCGcaugaggguggUGUG-GGCGcAGGCGuGCCGc -3'
miRNA:   3'- -GUCGGCa----------ACACuCCGC-UCCGC-CGGCc -5'
21702 5' -60.9 NC_004812.1 + 59706 0.66 0.736497
Target:  5'- gAGCgGcgGcGAgcGGCGAGGCGGgcccCCGGg -3'
miRNA:   3'- gUCGgCaaCaCU--CCGCUCCGCC----GGCC- -5'
21702 5' -60.9 NC_004812.1 + 60898 0.69 0.51384
Target:  5'- aAGUCGgcgGUGGGGCGcggcAGGCGGCa-- -3'
miRNA:   3'- gUCGGCaa-CACUCCGC----UCCGCCGgcc -5'
21702 5' -60.9 NC_004812.1 + 61098 0.73 0.330066
Target:  5'- -cGCCGggGUcGAGGCGGcgccccgcGGCGcGCCGGc -3'
miRNA:   3'- guCGGCaaCA-CUCCGCU--------CCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 61202 0.66 0.688653
Target:  5'- uGGCgGggGaacgauGGGCGGGGgGGCUGGg -3'
miRNA:   3'- gUCGgCaaCac----UCCGCUCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 61438 0.67 0.669156
Target:  5'- cCGGCCGUc-UGAGGgcccgcCGAGacCGGCCGGg -3'
miRNA:   3'- -GUCGGCAacACUCC------GCUCc-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 62003 0.72 0.391086
Target:  5'- cCGGCCGgUGcgcggGAcaggccgcGGCGAGGCGGCCucGGg -3'
miRNA:   3'- -GUCGGCaACa----CU--------CCGCUCCGCCGG--CC- -5'
21702 5' -60.9 NC_004812.1 + 62139 0.66 0.688653
Target:  5'- aGGCCGgaucgGcGGCGcGGGCGGCCu- -3'
miRNA:   3'- gUCGGCaaca-CuCCGC-UCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 62730 0.7 0.467937
Target:  5'- aGGCCGagGUGGaccGGCGgcuGGGCuGCCGGg -3'
miRNA:   3'- gUCGGCaaCACU---CCGC---UCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 63218 0.71 0.432782
Target:  5'- aGGCgGgcGggGAGGaCGAGGCGGCCu- -3'
miRNA:   3'- gUCGgCaaCa-CUCC-GCUCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 64183 0.68 0.581859
Target:  5'- gGGCCGggGgaugacucgagauggGGGGUGucGGGCGGcCCGGc -3'
miRNA:   3'- gUCGGCaaCa--------------CUCCGC--UCCGCC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.