miRNA display CGI


Results 21 - 40 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 152654 0.68 0.590642
Target:  5'- uGGCCGccGUGcccGGGCu-GGCGGCCGc -3'
miRNA:   3'- gUCGGCaaCAC---UCCGcuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 152640 0.67 0.639721
Target:  5'- gGGCCGgcGcGcGGCGGGGgGgcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCuCCGCUCCgC--CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 152561 0.66 0.707977
Target:  5'- gCGGCCuGcgGcgGAGGCGGagcGGCGGgCGGc -3'
miRNA:   3'- -GUCGG-CaaCa-CUCCGCU---CCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 152193 0.7 0.504504
Target:  5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3'
miRNA:   3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 152144 0.72 0.391086
Target:  5'- aGGCCGU----GGGCGGGGUcGCCGGg -3'
miRNA:   3'- gUCGGCAacacUCCGCUCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 151913 0.72 0.383067
Target:  5'- aCAGCCGccc-GGGGCucuGGGGCGcGCCGGa -3'
miRNA:   3'- -GUCGGCaacaCUCCG---CUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 151528 0.66 0.745848
Target:  5'- -uGCCGacgcggacgGcGAcGGCGGGGCcggGGCCGGg -3'
miRNA:   3'- guCGGCaa-------CaCU-CCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 151340 0.68 0.610235
Target:  5'- uCGGCCGagcGcGGGGcCGcGGCGGCCGa -3'
miRNA:   3'- -GUCGGCaa-CaCUCC-GCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 149309 0.67 0.649548
Target:  5'- gGGCCGggcgacGGGCGAcaGGCGGCCu- -3'
miRNA:   3'- gUCGGCaacac-UCCGCU--CCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 148536 0.66 0.707977
Target:  5'- nGGCCGccggGcGcGGCGGGGUcgcgGGCCGGc -3'
miRNA:   3'- gUCGGCaa--CaCuCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 148512 0.81 0.107787
Target:  5'- gGGCCGggG-GAGGgGGGGCGGCgCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCgCUCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 148252 0.7 0.502645
Target:  5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 148213 0.68 0.610235
Target:  5'- gGGCUGcgGgGGGGCcgcuuGGGUGGCCGGc -3'
miRNA:   3'- gUCGGCaaCaCUCCGc----UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 148178 0.66 0.707977
Target:  5'- cCGGCgGgcG-GGGGCGGcGGCcuccgguacGGCCGGg -3'
miRNA:   3'- -GUCGgCaaCaCUCCGCU-CCG---------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 147879 0.66 0.733676
Target:  5'- gGGCCGUc--GAGGCGuucggggcucgcgaGGGgGGCgCGGa -3'
miRNA:   3'- gUCGGCAacaCUCCGC--------------UCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 147835 0.71 0.432782
Target:  5'- aGGCCGgaGUGGGG-GGGGUGGCgGu -3'
miRNA:   3'- gUCGGCaaCACUCCgCUCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 147502 0.77 0.190149
Target:  5'- gCGGCgaGggG-GAcGGCGAGGCGGCCGGc -3'
miRNA:   3'- -GUCGg-CaaCaCU-CCGCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 145025 0.67 0.646601
Target:  5'- -cGCCG-UGUccccggcgagcgcgGAGGCgGGGGCGGCggCGGa -3'
miRNA:   3'- guCGGCaACA--------------CUCCG-CUCCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 144446 0.66 0.736497
Target:  5'- -cGCCGUUcUGGGGCcccGAcGGCGcGCCGc -3'
miRNA:   3'- guCGGCAAcACUCCG---CU-CCGC-CGGCc -5'
21702 5' -60.9 NC_004812.1 + 143864 0.76 0.218805
Target:  5'- aCGGCCGUguguucgcgggggUG-GGGGUGGGGCGGUgGGg -3'
miRNA:   3'- -GUCGGCA-------------ACaCUCCGCUCCGCCGgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.