miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 143544 0.66 0.698341
Target:  5'- -cGCCGUgaacGAGGCGGcccuGGCGcGCCuGGg -3'
miRNA:   3'- guCGGCAaca-CUCCGCU----CCGC-CGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 143496 0.68 0.571161
Target:  5'- cCGGCC--UG-GAcgcGGCGAGGCGGgcCCGGg -3'
miRNA:   3'- -GUCGGcaACaCU---CCGCUCCGCC--GGCC- -5'
21702 5' -60.9 NC_004812.1 + 142544 0.7 0.495241
Target:  5'- -cGUCGUgaucgacGAGGCGGGGCuucugGGCCGGc -3'
miRNA:   3'- guCGGCAaca----CUCCGCUCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 142400 0.76 0.229863
Target:  5'- -cGCCGggGgcGGGGcCGAGGaCGGCCGGa -3'
miRNA:   3'- guCGGCaaCa-CUCC-GCUCC-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 142193 0.66 0.736497
Target:  5'- uGGCCGgcGcGGGGCu-GGCcGCCGGc -3'
miRNA:   3'- gUCGGCaaCaCUCCGcuCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 141749 0.68 0.59749
Target:  5'- cCAGCCGUcGUcGGGcggccGCGGGGCGGCgucgaacggccgcgCGGg -3'
miRNA:   3'- -GUCGGCAaCA-CUC-----CGCUCCGCCG--------------GCC- -5'
21702 5' -60.9 NC_004812.1 + 141462 0.73 0.344641
Target:  5'- aGGUCGUgcgGggagcccccGAGGCGAcGCGGCCGGa -3'
miRNA:   3'- gUCGGCAa--Ca--------CUCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 140799 0.74 0.276358
Target:  5'- gAGCCGcac-GAGGCgcGAGGCGGCCGa -3'
miRNA:   3'- gUCGGCaacaCUCCG--CUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 139930 0.74 0.289098
Target:  5'- cCGGUCGggGUcggcggguucuGGGGCGGGG-GGCCGGg -3'
miRNA:   3'- -GUCGGCaaCA-----------CUCCGCUCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 139789 0.68 0.619075
Target:  5'- gCGGCCGccGUcuccuccucggcgGGGGuCGAGGUGGCCa- -3'
miRNA:   3'- -GUCGGCaaCA-------------CUCC-GCUCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 139542 0.68 0.620058
Target:  5'- -cGCCacgG-GGGGCGcguccgcGGCGGCCGGg -3'
miRNA:   3'- guCGGcaaCaCUCCGCu------CCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 139411 0.67 0.649548
Target:  5'- cCGGCCGcgaacGAcacCGGGGCGGCCGGu -3'
miRNA:   3'- -GUCGGCaaca-CUcc-GCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 138667 0.7 0.476954
Target:  5'- gGGCC--UGUGGGGCGAGGgGuGUgGGu -3'
miRNA:   3'- gUCGGcaACACUCCGCUCCgC-CGgCC- -5'
21702 5' -60.9 NC_004812.1 + 138466 0.66 0.698341
Target:  5'- gGGCUGUc--GGGGCGGGGC-GCCGc -3'
miRNA:   3'- gUCGGCAacaCUCCGCUCCGcCGGCc -5'
21702 5' -60.9 NC_004812.1 + 138028 0.68 0.580884
Target:  5'- -cGCCGgcgcggGUGcGGCGGcGGCGGCggCGGa -3'
miRNA:   3'- guCGGCaa----CACuCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 137964 0.68 0.620058
Target:  5'- uGGCCGUcUGcgGAGaCgGGGGCGGCCGc -3'
miRNA:   3'- gUCGGCA-ACa-CUCcG-CUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 137602 0.69 0.532717
Target:  5'- -cGCCGgccugGUGAucuuCGAGGCGGCCGu -3'
miRNA:   3'- guCGGCaa---CACUcc--GCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 136695 0.66 0.707977
Target:  5'- -cGCCGgcgcgGUGGcGGCGgcgcGGGCcGCCGGu -3'
miRNA:   3'- guCGGCaa---CACU-CCGC----UCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 135222 0.68 0.580884
Target:  5'- -cGUCGUcugUGuUGGGGCcGGGCGGgCGGg -3'
miRNA:   3'- guCGGCA---AC-ACUCCGcUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 133904 0.66 0.717554
Target:  5'- uCGGCCGUgGUaaccccGGGCGGGGgGGaCgCGGg -3'
miRNA:   3'- -GUCGGCAaCAc-----UCCGCUCCgCC-G-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.