miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 130475 0.72 0.399214
Target:  5'- gCGGCCGgcG-GcGGCGAGGCGGggggcgacggguCCGGg -3'
miRNA:   3'- -GUCGGCaaCaCuCCGCUCCGCC------------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 130438 0.73 0.31595
Target:  5'- gCGGCCcgcg-GAGGCGgcgcuggaGGGCGGCCGGc -3'
miRNA:   3'- -GUCGGcaacaCUCCGC--------UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 129737 0.68 0.600428
Target:  5'- gGGCCGggGgcgGcGGCGGcGGCGGCggCGGc -3'
miRNA:   3'- gUCGGCaaCa--CuCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 129535 0.68 0.588688
Target:  5'- aGGCCGUgaggcacucgGcGGCGGcGGCGGCCGcGg -3'
miRNA:   3'- gUCGGCAaca-------CuCCGCU-CCGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 129077 0.66 0.698341
Target:  5'- -cGCCGgcGggcAGGCGGcGGCGGCggCGGg -3'
miRNA:   3'- guCGGCaaCac-UCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 129025 0.75 0.264071
Target:  5'- gGGCCGgcGgccccgGGGGCGGGGCcgcggcgccgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCUCCG----------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 128720 0.69 0.523246
Target:  5'- gCAGCgGgcccGAGGCGcgcGGCGGCCGa -3'
miRNA:   3'- -GUCGgCaacaCUCCGCu--CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 128678 0.74 0.276358
Target:  5'- uGGCCGgcGgucuuccggGAGGCGGGGCGcCCGGu -3'
miRNA:   3'- gUCGGCaaCa--------CUCCGCUCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 128527 0.66 0.698341
Target:  5'- gCGGCCG-UGUcGGGCccgcaGAGGCGGuuGc -3'
miRNA:   3'- -GUCGGCaACAcUCCG-----CUCCGCCggCc -5'
21702 5' -60.9 NC_004812.1 + 128364 0.66 0.745848
Target:  5'- gGGCaCGgcGUccacgacgacGAGGC--GGCGGCCGGc -3'
miRNA:   3'- gUCG-GCaaCA----------CUCCGcuCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 128156 0.68 0.600428
Target:  5'- gCGGCgCGUccggGUaGAGGCGcgcgcAGGCGGCCu- -3'
miRNA:   3'- -GUCG-GCAa---CA-CUCCGC-----UCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 127523 0.68 0.600428
Target:  5'- gGGCCGgcGUccucGGCGAGGCucgaGGcCCGGa -3'
miRNA:   3'- gUCGGCaaCAcu--CCGCUCCG----CC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 127480 0.66 0.717554
Target:  5'- -cGCCGggGggagGGGGggaGGGGUGGgCGGg -3'
miRNA:   3'- guCGGCaaCa---CUCCg--CUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 126933 0.71 0.432782
Target:  5'- gCGGCCGcgGggaGGGGcCGGGGCcgcgagGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCa--CUCC-GCUCCG------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 125317 0.68 0.610235
Target:  5'- -cGCgCGUgg-GGGGCGGGGCGccgcgggaugcGCCGGc -3'
miRNA:   3'- guCG-GCAacaCUCCGCUCCGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 125165 0.66 0.698341
Target:  5'- -cGCCGggGcggGAGGCGGGaG-GGcCCGGg -3'
miRNA:   3'- guCGGCaaCa--CUCCGCUC-CgCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 124640 0.68 0.610235
Target:  5'- gCGGCCGggcagGAGGaGAccGCGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca-CUCCgCUc-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 124583 0.66 0.736497
Target:  5'- gGGCC--UG-GAGcccccGgGGGGCGGCCGGu -3'
miRNA:   3'- gUCGGcaACaCUC-----CgCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 124263 0.66 0.745848
Target:  5'- gCGGUCGUg--GGGGCGGGGa--CCGGg -3'
miRNA:   3'- -GUCGGCAacaCUCCGCUCCgccGGCC- -5'
21702 5' -60.9 NC_004812.1 + 124173 0.7 0.504504
Target:  5'- -uGCCGguacGUGGGGCGgcugGGcGCGGCCGc -3'
miRNA:   3'- guCGGCaa--CACUCCGC----UC-CGCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.