miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 123922 0.7 0.495241
Target:  5'- -uGCUGcgGcGGGGCGGaGCGGCCGGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 123577 0.67 0.639721
Target:  5'- gGGCCGccg-GGGGC--GGCGGCCGa -3'
miRNA:   3'- gUCGGCaacaCUCCGcuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 123548 0.74 0.282671
Target:  5'- gGGCCGggcGUcccGGGGCGAGcgaggcggcGCGGCCGGg -3'
miRNA:   3'- gUCGGCaa-CA---CUCCGCUC---------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 122698 0.68 0.610235
Target:  5'- gCAGCuCGgcGUGgAGGCG-GGCGGCg-- -3'
miRNA:   3'- -GUCG-GCaaCAC-UCCGCuCCGCCGgcc -5'
21702 5' -60.9 NC_004812.1 + 122530 0.71 0.450171
Target:  5'- aAGCCGgcgGUGAgucgggGGCGGGG-GGCgCGGg -3'
miRNA:   3'- gUCGGCaa-CACU------CCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 122365 0.72 0.359673
Target:  5'- gGGCCGggGcgcGGGGCGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCa--CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 122303 0.71 0.441428
Target:  5'- gGGCCGcc--GGGGgGAGGCGGgCGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgCUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 122122 0.67 0.678923
Target:  5'- gGGCCag-GgccuGGGCGAGGaCGGCCuGGg -3'
miRNA:   3'- gUCGGcaaCac--UCCGCUCC-GCCGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 121882 0.73 0.32295
Target:  5'- gGGgCGggGccUGGGGCGGGGCcgcaGGCCGGg -3'
miRNA:   3'- gUCgGCaaC--ACUCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121790 0.66 0.707977
Target:  5'- gGGCCGcUUGggcccucgcguggcgGGGGCggccucgGAGGCggaGGCCGGg -3'
miRNA:   3'- gUCGGC-AACa--------------CUCCG-------CUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121739 0.71 0.424235
Target:  5'- gGGCCGgcGcGcGGCGGGGgGcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCuCCGCUCCgC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121660 0.66 0.707977
Target:  5'- gCGGCCuGcgGcgGAGGCGGagcGGCGGgCGGc -3'
miRNA:   3'- -GUCGG-CaaCa-CUCCGCU---CCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 121292 0.7 0.504504
Target:  5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3'
miRNA:   3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 121243 0.72 0.391086
Target:  5'- aGGCCGU----GGGCGGGGUcGCCGGg -3'
miRNA:   3'- gUCGGCAacacUCCGCUCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 120877 0.7 0.504504
Target:  5'- -cGCUGUaGcGGGGCGGGGCGGagacgCGGg -3'
miRNA:   3'- guCGGCAaCaCUCCGCUCCGCCg----GCC- -5'
21702 5' -60.9 NC_004812.1 + 118408 0.67 0.649548
Target:  5'- gGGCCGggcgacGGGCGAcaGGCGGCCu- -3'
miRNA:   3'- gUCGGCaacac-UCCGCU--CCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 117635 0.66 0.707977
Target:  5'- nGGCCGccggGcGcGGCGGGGUcgcgGGCCGGc -3'
miRNA:   3'- gUCGGCaa--CaCuCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 117611 0.81 0.107787
Target:  5'- gGGCCGggG-GAGGgGGGGCGGCgCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCgCUCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 117351 0.7 0.502645
Target:  5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 117277 0.66 0.707977
Target:  5'- cCGGCgGgcG-GGGGCGGcGGCcuccgguacGGCCGGg -3'
miRNA:   3'- -GUCGgCaaCaCUCCGCU-CCG---------CCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.