miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 117263 0.69 0.551838
Target:  5'- aGGCCGUgcugGGGGCguucGAGcGCGGCaCGGc -3'
miRNA:   3'- gUCGGCAaca-CUCCG----CUC-CGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 116934 0.71 0.432782
Target:  5'- aGGCCGgaGUGGGG-GGGGUGGCgGu -3'
miRNA:   3'- gUCGGCaaCACUCCgCUCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 116452 0.67 0.629888
Target:  5'- gCGGCCGUcgcgcUGUGGGuCGcGGCGGCgGa -3'
miRNA:   3'- -GUCGGCA-----ACACUCcGCuCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 116294 0.71 0.432782
Target:  5'- -cGCUGUcucUGUGGuacGGgGGGGCGGCCGu -3'
miRNA:   3'- guCGGCA---ACACU---CCgCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 115809 1.1 0.001005
Target:  5'- gCAGCCGUUGUGAGGCGAGGCGGCCGGg -3'
miRNA:   3'- -GUCGGCAACACUCCGCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 115256 0.66 0.685738
Target:  5'- cCGGUgGUgcgugGuUGAGGCGuAGGCcagcuccaucccgcGGCCGGa -3'
miRNA:   3'- -GUCGgCAa----C-ACUCCGC-UCCG--------------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 114914 0.67 0.669156
Target:  5'- uGGCuCGgUGUGucguggcuGGCGGGGgGGuuGGg -3'
miRNA:   3'- gUCG-GCaACACu-------CCGCUCCgCCggCC- -5'
21702 5' -60.9 NC_004812.1 + 114753 0.66 0.736497
Target:  5'- gAGCCGggggagGUGcgcuguacgaGGGCGaAGGCGuaCGGg -3'
miRNA:   3'- gUCGGCaa----CAC----------UCCGC-UCCGCcgGCC- -5'
21702 5' -60.9 NC_004812.1 + 114632 0.68 0.588688
Target:  5'- gCGGCCGUUGUGcagccggccguucAGcGCG-GGCaccaucaagagcgGGCCGGu -3'
miRNA:   3'- -GUCGGCAACAC-------------UC-CGCuCCG-------------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 114482 0.66 0.736497
Target:  5'- uGGCCGccg-GGGGaaGGGCGGCgGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgcUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 112950 0.68 0.620058
Target:  5'- -cGCCGUgucgcugGUGaAGGCGAcguccGGCGGCgaUGGa -3'
miRNA:   3'- guCGGCAa------CAC-UCCGCU-----CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 112233 0.66 0.744917
Target:  5'- cCGGCCGgacgcgGGGGCGGacggggcgugguuGGUGGgCGGg -3'
miRNA:   3'- -GUCGGCaaca--CUCCGCU-------------CCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 109159 0.68 0.580884
Target:  5'- cCGGCCGUcgGgccUGGGGCggGAGGCGGUgGa -3'
miRNA:   3'- -GUCGGCAa-C---ACUCCG--CUCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 107635 0.72 0.383067
Target:  5'- gCGGCCGcgucGcGGGGCacgucgccgGGGGCGGCCGGc -3'
miRNA:   3'- -GUCGGCaa--CaCUCCG---------CUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 107560 0.67 0.639721
Target:  5'- uGGCCGcgGcucagGaAGGCGGcGGCGGCgCGGu -3'
miRNA:   3'- gUCGGCaaCa----C-UCCGCU-CCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 107356 0.85 0.056788
Target:  5'- uCGGCCGUUG-GGGGCGGGGggaUGGCCGGa -3'
miRNA:   3'- -GUCGGCAACaCUCCGCUCC---GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 107306 0.67 0.669156
Target:  5'- gGGCCu---UGGGGCGuuccggggGGGCGGCCGcGg -3'
miRNA:   3'- gUCGGcaacACUCCGC--------UCCGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 106774 0.68 0.620058
Target:  5'- gGGgCGgcGUcGGGCGGGGCGcGCgGGa -3'
miRNA:   3'- gUCgGCaaCAcUCCGCUCCGC-CGgCC- -5'
21702 5' -60.9 NC_004812.1 + 106555 0.67 0.659362
Target:  5'- -cGCCGggGagcUGAGGgagGAGGCgcccgGGCCGGg -3'
miRNA:   3'- guCGGCaaC---ACUCCg--CUCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 105799 0.71 0.424235
Target:  5'- -cGCCGggGggcuugGGGGUGGGGgcucCGGCCGGc -3'
miRNA:   3'- guCGGCaaCa-----CUCCGCUCC----GCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.