miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 122530 0.71 0.450171
Target:  5'- aAGCCGgcgGUGAgucgggGGCGGGG-GGCgCGGg -3'
miRNA:   3'- gUCGGCaa-CACU------CCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 100115 0.7 0.459008
Target:  5'- gCGGgCGggGgaggggagggGAGGCGuGGCGGCgCGGg -3'
miRNA:   3'- -GUCgGCaaCa---------CUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 155588 0.7 0.464355
Target:  5'- gCGGCCGggcccucgcgGGGGCGcGGCcccGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca------CUCCGCuCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 62730 0.7 0.467937
Target:  5'- aGGCCGagGUGGaccGGCGgcuGGGCuGCCGGg -3'
miRNA:   3'- gUCGGCaaCACU---CCGC---UCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 92231 0.7 0.467937
Target:  5'- gGGCCGggagagggUGUGGccuGGCGGGGCGGa-GGa -3'
miRNA:   3'- gUCGGCa-------ACACU---CCGCUCCGCCggCC- -5'
21702 5' -60.9 NC_004812.1 + 5620 0.7 0.476954
Target:  5'- gGGCCG----GAGGCGGcucGGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCU---CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 39833 0.7 0.486057
Target:  5'- gCGGCCGc-GUGcccguAGGCGgugcGGGgGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCAC-----UCCGC----UCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 100383 0.71 0.432782
Target:  5'- -cGCCGgg--GGGcGCGAGGCcaccGGCCGGa -3'
miRNA:   3'- guCGGCaacaCUC-CGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 6099 0.71 0.432782
Target:  5'- gGGUCGgcGggaacgGGGGCGAcGGCGGCgGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCU-CCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 126933 0.71 0.432782
Target:  5'- gCGGCCGcgGggaGGGGcCGGGGCcgcgagGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCa--CUCC-GCUCCG------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 73180 0.71 0.40745
Target:  5'- gGGCCGguacagggcGUG-GGCGGGcGgGGCCGGg -3'
miRNA:   3'- gUCGGCaa-------CACuCCGCUC-CgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 77455 0.71 0.416631
Target:  5'- uCGGCCGggGggcucguggcgagcgGAGGCGGGGCuGGgacCCGGg -3'
miRNA:   3'- -GUCGGCaaCa--------------CUCCGCUCCG-CC---GGCC- -5'
21702 5' -60.9 NC_004812.1 + 58402 0.71 0.424235
Target:  5'- gCGGCCGccgccUG-GAGGCugggGGGGCGGCgGGa -3'
miRNA:   3'- -GUCGGCa----ACaCUCCG----CUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 68219 0.71 0.424235
Target:  5'- gCGGCCGgccgGGGGUGcgcGGgGGCCGGg -3'
miRNA:   3'- -GUCGGCaacaCUCCGCu--CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 69000 0.71 0.424235
Target:  5'- cCGGCCacgcUGcGGGGCGGGGagugcgaGGCCGGg -3'
miRNA:   3'- -GUCGGca--ACaCUCCGCUCCg------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121739 0.71 0.424235
Target:  5'- gGGCCGgcGcGcGGCGGGGgGcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCuCCGCUCCgC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 93491 0.71 0.424235
Target:  5'- gGGCCGag--GAgGGCgGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCU-CCG-CUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 63218 0.71 0.432782
Target:  5'- aGGCgGgcGggGAGGaCGAGGCGGCCu- -3'
miRNA:   3'- gUCGgCaaCa-CUCC-GCUCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 116934 0.71 0.432782
Target:  5'- aGGCCGgaGUGGGG-GGGGUGGCgGu -3'
miRNA:   3'- gUCGGCaaCACUCCgCUCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 101893 0.7 0.486057
Target:  5'- -cGCCGggcuagGgcgccccGAGGCGcGGCGGUCGGg -3'
miRNA:   3'- guCGGCaa----Ca------CUCCGCuCCGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.