miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 116294 0.71 0.432782
Target:  5'- -cGCUGUcucUGUGGuacGGgGGGGCGGCCGu -3'
miRNA:   3'- guCGGCA---ACACU---CCgCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 153204 0.71 0.441428
Target:  5'- gGGCCGcc--GGGGgGAGGCGGgCGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgCUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 39091 0.77 0.204284
Target:  5'- gGGCCGggGUccGGcCGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCAcuCC-GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 30351 0.75 0.264071
Target:  5'- -cGCCGg---GAGGCGAGGCGcGCgCGGc -3'
miRNA:   3'- guCGGCaacaCUCCGCUCCGC-CG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 154449 0.74 0.282671
Target:  5'- gGGCCGggcGUcccGGGGCGAGcgaggcggcGCGGCCGGg -3'
miRNA:   3'- gUCGGCaa-CA---CUCCGCUC---------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 4930 0.73 0.31595
Target:  5'- gCGGCCcgcg-GAGGCGgcgcuggaGGGCGGCCGGc -3'
miRNA:   3'- -GUCGGcaacaCUCCGC--------UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 16758 0.73 0.337296
Target:  5'- uCAGUCGg---GGGGCGcGGgGGCCGGa -3'
miRNA:   3'- -GUCGGCaacaCUCCGCuCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 153266 0.72 0.359673
Target:  5'- gGGCCGggGcgcGGGGCGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCa--CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 52222 0.72 0.378308
Target:  5'- -cGCCGUcuguuucgcccucggUGgggGAGGUGcGGGCGGCUGGu -3'
miRNA:   3'- guCGGCA---------------ACa--CUCCGC-UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 4967 0.72 0.391086
Target:  5'- gCGGCCGgcG-GcGGCGAGGCGGgggcgacggguCCGGg -3'
miRNA:   3'- -GUCGGCaaCaCuCCGCUCCGCC-----------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 4026 0.68 0.588688
Target:  5'- aGGCCGUgaggcacucgGcGGCGGcGGCGGCCGcGg -3'
miRNA:   3'- gUCGGCAaca-------CuCCGCU-CCGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 138028 0.68 0.580884
Target:  5'- -cGCCGgcgcggGUGcGGCGGcGGCGGCggCGGa -3'
miRNA:   3'- guCGGCaa----CACuCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 138667 0.7 0.476954
Target:  5'- gGGCC--UGUGGGGCGAGGgGuGUgGGu -3'
miRNA:   3'- gUCGGcaACACUCCGCUCCgC-CGgCC- -5'
21702 5' -60.9 NC_004812.1 + 18443 0.7 0.486057
Target:  5'- gGGCCGcguccgGUGGcgcGGCGGGGgGGCgCGGc -3'
miRNA:   3'- gUCGGCaa----CACU---CCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 142544 0.7 0.495241
Target:  5'- -cGUCGUgaucgacGAGGCGGGGCuucugGGCCGGc -3'
miRNA:   3'- guCGGCAaca----CUCCGCUCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 88939 0.7 0.504504
Target:  5'- uGGCCGccggUGgcGAGGaGGGcGCGGCCGGc -3'
miRNA:   3'- gUCGGCa---ACa-CUCCgCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 152193 0.7 0.504504
Target:  5'- gGGCCGccucggGcAGGCGAGuGCGGCgGGa -3'
miRNA:   3'- gUCGGCaaca--C-UCCGCUC-CGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 51887 0.69 0.523246
Target:  5'- gCGGCCGU---GGGcGCGuGGCGGCCa- -3'
miRNA:   3'- -GUCGGCAacaCUC-CGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 29746 0.69 0.561476
Target:  5'- gGGCCGagGgGGGGCGcGGCGGacgccaaaCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCuCCGCC--------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 35680 0.68 0.571161
Target:  5'- gCGGUgGggGagGGGGCGGGGCgagGGCUGGu -3'
miRNA:   3'- -GUCGgCaaCa-CUCCGCUCCG---CCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.