miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 36521 0.7 0.476954
Target:  5'- gGGCCG----GAGGCGGcucGGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCU---CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 83191 0.7 0.495241
Target:  5'- gAGCuCGcgGcggGAGGCGcGGCGGCCGc -3'
miRNA:   3'- gUCG-GCaaCa--CUCCGCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 148252 0.7 0.502645
Target:  5'- gCGGCCGccgacgcGGUGGGGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacacu-CCGCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 21902 0.7 0.504504
Target:  5'- gGGUCGc--UGAGGcCGAGGCGGUCGu -3'
miRNA:   3'- gUCGGCaacACUCC-GCUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 60898 0.69 0.51384
Target:  5'- aAGUCGgcgGUGGGGCGcggcAGGCGGCa-- -3'
miRNA:   3'- gUCGGCaa-CACUCCGC----UCCGCCGgcc -5'
21702 5' -60.9 NC_004812.1 + 29746 0.69 0.561476
Target:  5'- gGGCCGagGgGGGGCGcGGCGGacgccaaaCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCuCCGCC--------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 35680 0.68 0.571161
Target:  5'- gCGGUgGggGagGGGGCGGGGCgagGGCUGGu -3'
miRNA:   3'- -GUCGgCaaCa-CUCCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 4967 0.72 0.391086
Target:  5'- gCGGCCGgcG-GcGGCGAGGCGGgggcgacggguCCGGg -3'
miRNA:   3'- -GUCGGCaaCaCuCCGCUCCGCC-----------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 52222 0.72 0.378308
Target:  5'- -cGCCGUcuguuucgcccucggUGgggGAGGUGcGGGCGGCUGGu -3'
miRNA:   3'- guCGGCA---------------ACa--CUCCGC-UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 153266 0.72 0.359673
Target:  5'- gGGCCGggGcgcGGGGCGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCa--CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 38844 0.68 0.599448
Target:  5'- gCGGCCGg---GGGGCGcguccggGGGgGGCCGa -3'
miRNA:   3'- -GUCGGCaacaCUCCGC-------UCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 122698 0.68 0.610235
Target:  5'- gCAGCuCGgcGUGgAGGCG-GGCGGCg-- -3'
miRNA:   3'- -GUCG-GCaaCAC-UCCGCuCCGCCGgcc -5'
21702 5' -60.9 NC_004812.1 + 25832 0.68 0.610235
Target:  5'- uCGGCCGagcGcGGGGcCGcGGCGGCCGa -3'
miRNA:   3'- -GUCGGCaa-CaCUCC-GCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 37727 0.68 0.620058
Target:  5'- gGGCUGg-GUGGGGgGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCACUCCgCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 137964 0.68 0.620058
Target:  5'- uGGCCGUcUGcgGAGaCgGGGGCGGCCGc -3'
miRNA:   3'- gUCGGCA-ACa-CUCcG-CUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 39091 0.77 0.204284
Target:  5'- gGGCCGggGUccGGcCGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCAcuCC-GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 30351 0.75 0.264071
Target:  5'- -cGCCGg---GAGGCGAGGCGcGCgCGGc -3'
miRNA:   3'- guCGGCaacaCUCCGCUCCGC-CG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 154449 0.74 0.282671
Target:  5'- gGGCCGggcGUcccGGGGCGAGcgaggcggcGCGGCCGGg -3'
miRNA:   3'- gUCGGCaa-CA---CUCCGCUC---------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 4930 0.73 0.31595
Target:  5'- gCGGCCcgcg-GAGGCGgcgcuggaGGGCGGCCGGc -3'
miRNA:   3'- -GUCGGcaacaCUCCGC--------UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 16758 0.73 0.337296
Target:  5'- uCAGUCGg---GGGGCGcGGgGGCCGGa -3'
miRNA:   3'- -GUCGGCaacaCUCCGCuCCgCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.