miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 44009 0.66 0.736497
Target:  5'- uGGCCGagGccagcagGAGGCuccGGCGGCCGc -3'
miRNA:   3'- gUCGGCaaCa------CUCCGcu-CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 144446 0.66 0.736497
Target:  5'- -cGCCGUUcUGGGGCcccGAcGGCGcGCCGc -3'
miRNA:   3'- guCGGCAAcACUCCG---CU-CCGC-CGGCc -5'
21702 5' -60.9 NC_004812.1 + 124583 0.66 0.736497
Target:  5'- gGGCC--UG-GAGcccccGgGGGGCGGCCGGu -3'
miRNA:   3'- gUCGGcaACaCUC-----CgCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 30166 0.66 0.736497
Target:  5'- aCAGCCGg---GAGcGCGcGGCgGGCuCGGc -3'
miRNA:   3'- -GUCGGCaacaCUC-CGCuCCG-CCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 114753 0.66 0.736497
Target:  5'- gAGCCGggggagGUGcgcuguacgaGGGCGaAGGCGuaCGGg -3'
miRNA:   3'- gUCGGCaa----CAC----------UCCGC-UCCGCcgGCC- -5'
21702 5' -60.9 NC_004812.1 + 90420 0.66 0.736497
Target:  5'- -uGUCGUcUGUGcGGGCGcGGGaCGGCgGGg -3'
miRNA:   3'- guCGGCA-ACAC-UCCGC-UCC-GCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 153681 0.66 0.736497
Target:  5'- -cGCCGaggGUgacGAGGaCGGGGCGGgcucccCCGGg -3'
miRNA:   3'- guCGGCaa-CA---CUCC-GCUCCGCC------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 59706 0.66 0.736497
Target:  5'- gAGCgGcgGcGAgcGGCGAGGCGGgcccCCGGg -3'
miRNA:   3'- gUCGgCaaCaCU--CCGCUCCGCC----GGCC- -5'
21702 5' -60.9 NC_004812.1 + 114482 0.66 0.736497
Target:  5'- uGGCCGccg-GGGGaaGGGCGGCgGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgcUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 17023 0.66 0.734617
Target:  5'- gAGCCGggggGUGAaggggucGGCGGGGggcgccucgguccCGGCCGc -3'
miRNA:   3'- gUCGGCaa--CACU-------CCGCUCC-------------GCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 147879 0.66 0.733676
Target:  5'- gGGCCGUc--GAGGCGuucggggcucgcgaGGGgGGCgCGGa -3'
miRNA:   3'- gUCGGCAacaCUCCGC--------------UCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 75797 0.66 0.727064
Target:  5'- cCAGUCGa--UGcGGCG-GGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacACuCCGCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 83843 0.66 0.727064
Target:  5'- cCGGCCGUcuccGGGGgGA-GCGGCgGGg -3'
miRNA:   3'- -GUCGGCAaca-CUCCgCUcCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 9911 0.66 0.727064
Target:  5'- uGGUCGgc--GAGGCGuGGCGcCCGGu -3'
miRNA:   3'- gUCGGCaacaCUCCGCuCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 71205 0.66 0.727064
Target:  5'- gGGCCGcgccagGcGGCGAgcgGGCGGCCGc -3'
miRNA:   3'- gUCGGCaaca--CuCCGCU---CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 54382 0.66 0.727064
Target:  5'- uGGCCGUc---GGGCGcccgcGGGCacGGCCGGg -3'
miRNA:   3'- gUCGGCAacacUCCGC-----UCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 105183 0.66 0.727064
Target:  5'- gCGGCCGcgUGccugcGAGcGCGGGGCgcgGGCgCGGg -3'
miRNA:   3'- -GUCGGCa-ACa----CUC-CGCUCCG---CCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 37516 0.66 0.727064
Target:  5'- -uGCgUGUUGUGGaGC-AGGCGGCCGu -3'
miRNA:   3'- guCG-GCAACACUcCGcUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 25866 0.66 0.727064
Target:  5'- gGGCC----UGGGGuUGGcGGCGGCCGGc -3'
miRNA:   3'- gUCGGcaacACUCC-GCU-CCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 54660 0.66 0.727064
Target:  5'- -cGCCGccGcGGGGCccaGCGGCCGGg -3'
miRNA:   3'- guCGGCaaCaCUCCGcucCGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.