miRNA display CGI


Results 1 - 20 of 639 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21703 3' -58.3 NC_004812.1 + 4433 0.66 0.823356
Target:  5'- -gGCACGGCGCgGGCCACggUGcCGguGAu -3'
miRNA:   3'- uaUGUGUUGCG-CCGGUGg-GC-GCguCU- -5'
21703 3' -58.3 NC_004812.1 + 127671 0.66 0.823356
Target:  5'- --uCGCGGCgGCGGCCACCUccacgGCgGCGGc -3'
miRNA:   3'- uauGUGUUG-CGCCGGUGGG-----CG-CGUCu -5'
21703 3' -58.3 NC_004812.1 + 112579 0.66 0.823356
Target:  5'- -cGCGCAggugacGCGCGGCCGCCgGaGCc-- -3'
miRNA:   3'- uaUGUGU------UGCGCCGGUGGgCgCGucu -5'
21703 3' -58.3 NC_004812.1 + 128696 0.66 0.823356
Target:  5'- -gGCGCAuccAgGCGGCgGCgCgGCGCAGc -3'
miRNA:   3'- uaUGUGU---UgCGCCGgUG-GgCGCGUCu -5'
21703 3' -58.3 NC_004812.1 + 148261 0.66 0.823356
Target:  5'- -gACGCGgugGgGCGGCCgcGCCCG-GCAGc -3'
miRNA:   3'- uaUGUGU---UgCGCCGG--UGGGCgCGUCu -5'
21703 3' -58.3 NC_004812.1 + 96524 0.66 0.823356
Target:  5'- -gGCACc-CGgGGCuCGCCCGCGUg-- -3'
miRNA:   3'- uaUGUGuuGCgCCG-GUGGGCGCGucu -5'
21703 3' -58.3 NC_004812.1 + 117742 0.66 0.823356
Target:  5'- -gACgACGuCGCGcGCCACCUGCugacauGCAGGa -3'
miRNA:   3'- uaUG-UGUuGCGC-CGGUGGGCG------CGUCU- -5'
21703 3' -58.3 NC_004812.1 + 65776 0.66 0.823356
Target:  5'- --cCGCGcCGCGGgCGCCgGCGCuacGGAg -3'
miRNA:   3'- uauGUGUuGCGCCgGUGGgCGCG---UCU- -5'
21703 3' -58.3 NC_004812.1 + 73896 0.66 0.823356
Target:  5'- ---gGCGGcCGCGGCCGCCgaguCGCGCcAGc -3'
miRNA:   3'- uaugUGUU-GCGCCGGUGG----GCGCG-UCu -5'
21703 3' -58.3 NC_004812.1 + 81730 0.66 0.823356
Target:  5'- cGUGCACGAuCGCGuGCaGCUCGCGgAGc -3'
miRNA:   3'- -UAUGUGUU-GCGC-CGgUGGGCGCgUCu -5'
21703 3' -58.3 NC_004812.1 + 117360 0.66 0.823356
Target:  5'- -gACGCGgugGgGCGGCCgcGCCCG-GCAGc -3'
miRNA:   3'- uaUGUGU---UgCGCCGG--UGGGCgCGUCu -5'
21703 3' -58.3 NC_004812.1 + 128178 0.66 0.823356
Target:  5'- -cGCGCAG-GCGGCCucgACgCGCGCGa- -3'
miRNA:   3'- uaUGUGUUgCGCCGG---UGgGCGCGUcu -5'
21703 3' -58.3 NC_004812.1 + 3187 0.66 0.823356
Target:  5'- -gGCGCAuccAgGCGGCgGCgCgGCGCAGc -3'
miRNA:   3'- uaUGUGU---UgCGCCGgUG-GgCGCGUCu -5'
21703 3' -58.3 NC_004812.1 + 137570 0.66 0.823356
Target:  5'- -gGC-CGcCGCGGCCgagaggcugccGCCCGCGCu-- -3'
miRNA:   3'- uaUGuGUuGCGCCGG-----------UGGGCGCGucu -5'
21703 3' -58.3 NC_004812.1 + 5047 0.66 0.823356
Target:  5'- -aGCGC--CGCGGUCacggggGCCCGgGCGGGa -3'
miRNA:   3'- uaUGUGuuGCGCCGG------UGGGCgCGUCU- -5'
21703 3' -58.3 NC_004812.1 + 26271 0.66 0.823356
Target:  5'- -gACGCGgccGCGCGGgUGCCC-CGCGGc -3'
miRNA:   3'- uaUGUGU---UGCGCCgGUGGGcGCGUCu -5'
21703 3' -58.3 NC_004812.1 + 58216 0.66 0.823356
Target:  5'- -gGCGCcgcccCGCGGCCGCCgCGcCGCccgaGGAc -3'
miRNA:   3'- uaUGUGuu---GCGCCGGUGG-GC-GCG----UCU- -5'
21703 3' -58.3 NC_004812.1 + 129941 0.66 0.823356
Target:  5'- -gGCACGGCGCgGGCCACggUGcCGguGAu -3'
miRNA:   3'- uaUGUGUUGCG-CCGGUGg-GC-GCguCU- -5'
21703 3' -58.3 NC_004812.1 + 40197 0.66 0.823356
Target:  5'- --cCAgGGCGCGG--GCCCGCaGCGGAu -3'
miRNA:   3'- uauGUgUUGCGCCggUGGGCG-CGUCU- -5'
21703 3' -58.3 NC_004812.1 + 2162 0.66 0.823356
Target:  5'- --uCGCGGCgGCGGCCACCUccacgGCgGCGGc -3'
miRNA:   3'- uauGUGUUG-CGCCGGUGGG-----CG-CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.