miRNA display CGI


Results 1 - 20 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21703 5' -57.9 NC_004812.1 + 36942 0.66 0.867638
Target:  5'- -cCCCGCGGGgaaGCCGGGCgcgUUcAUCa -3'
miRNA:   3'- ccGGGCGCCC---CGGCUCGagaAAaUGG- -5'
21703 5' -57.9 NC_004812.1 + 95517 0.66 0.867638
Target:  5'- cGGCCgGgGGgcuGGCCGAGCUgUcgaugUUgucUGCCc -3'
miRNA:   3'- -CCGGgCgCC---CCGGCUCGAgA-----AA---AUGG- -5'
21703 5' -57.9 NC_004812.1 + 52599 0.66 0.867638
Target:  5'- aGGCCCGCGaacaGGGCgGcgugcgcgucGGC-CUUgaugACCg -3'
miRNA:   3'- -CCGGGCGC----CCCGgC----------UCGaGAAaa--UGG- -5'
21703 5' -57.9 NC_004812.1 + 86593 0.66 0.867638
Target:  5'- uGUCCGCGgaugaaguugcGGGCCGcGGCgCggUUGCCc -3'
miRNA:   3'- cCGGGCGC-----------CCCGGC-UCGaGaaAAUGG- -5'
21703 5' -57.9 NC_004812.1 + 113967 0.66 0.867638
Target:  5'- uGGCgUCGCGGGGgCGuuguccuGUUCgc-UGCCg -3'
miRNA:   3'- -CCG-GGCGCCCCgGCu------CGAGaaaAUGG- -5'
21703 5' -57.9 NC_004812.1 + 101906 0.66 0.867638
Target:  5'- cGCCCcgaggcGCGGcGGUCGGGcCUCggg-GCCc -3'
miRNA:   3'- cCGGG------CGCC-CCGGCUC-GAGaaaaUGG- -5'
21703 5' -57.9 NC_004812.1 + 73387 0.66 0.867638
Target:  5'- cGCCCG-GGGGCCaccgaggcccccGAGCgCg---GCCg -3'
miRNA:   3'- cCGGGCgCCCCGG------------CUCGaGaaaaUGG- -5'
21703 5' -57.9 NC_004812.1 + 116441 0.66 0.867638
Target:  5'- cGGCCUGCGGGGC--GGCcgUCgc--GCUg -3'
miRNA:   3'- -CCGGGCGCCCCGgcUCG--AGaaaaUGG- -5'
21703 5' -57.9 NC_004812.1 + 103266 0.66 0.867638
Target:  5'- aGGCgCGCGGGGgCGAcggccgccccccGCacgCUgacggUGCCg -3'
miRNA:   3'- -CCGgGCGCCCCgGCU------------CGa--GAaa---AUGG- -5'
21703 5' -57.9 NC_004812.1 + 25554 0.66 0.867638
Target:  5'- -cUCCGCGGGcgccucGCCGGGCUCgcggaagACg -3'
miRNA:   3'- ccGGGCGCCC------CGGCUCGAGaaaa---UGg -5'
21703 5' -57.9 NC_004812.1 + 104836 0.66 0.867638
Target:  5'- --gCCGCGGcGGCgGucuGGCUCUUg-GCCg -3'
miRNA:   3'- ccgGGCGCC-CCGgC---UCGAGAAaaUGG- -5'
21703 5' -57.9 NC_004812.1 + 74712 0.66 0.867638
Target:  5'- cGCCCuGCGGGuGCUG-GC-CUgg-GCCc -3'
miRNA:   3'- cCGGG-CGCCC-CGGCuCGaGAaaaUGG- -5'
21703 5' -57.9 NC_004812.1 + 70584 0.66 0.863231
Target:  5'- gGGCCgCGUuggccgagaggggcgGGGGCCcgaaguagGAGCUCggagagGCCc -3'
miRNA:   3'- -CCGG-GCG---------------CCCCGG--------CUCGAGaaaa--UGG- -5'
21703 5' -57.9 NC_004812.1 + 13698 0.66 0.861001
Target:  5'- gGGCCCGCaggaGGGGCUG-GCgggucggguCCa -3'
miRNA:   3'- -CCGGGCG----CCCCGGCuCGagaaaau--GG- -5'
21703 5' -57.9 NC_004812.1 + 35622 0.66 0.860254
Target:  5'- gGGCCgaaCGCGGGGgaGGGUUgacgUGCCg -3'
miRNA:   3'- -CCGG---GCGCCCCggCUCGAgaaaAUGG- -5'
21703 5' -57.9 NC_004812.1 + 123917 0.66 0.860254
Target:  5'- cGCCaugcugcgGCGGGGCgGAGCg-----GCCg -3'
miRNA:   3'- cCGGg-------CGCCCCGgCUCGagaaaaUGG- -5'
21703 5' -57.9 NC_004812.1 + 31709 0.66 0.860254
Target:  5'- aGGCCUcCGucaGGGCCucggcGAGCUCg---GCCg -3'
miRNA:   3'- -CCGGGcGC---CCCGG-----CUCGAGaaaaUGG- -5'
21703 5' -57.9 NC_004812.1 + 62139 0.66 0.860254
Target:  5'- aGGCCggaucggcggCGCGGGcggccuCCGGGUUCUUcggGCCc -3'
miRNA:   3'- -CCGG----------GCGCCCc-----GGCUCGAGAAaa-UGG- -5'
21703 5' -57.9 NC_004812.1 + 7666 0.66 0.860254
Target:  5'- gGGCCCGC-GGGCCggGAGCgggggUggGCg -3'
miRNA:   3'- -CCGGGCGcCCCGG--CUCGaga--AaaUGg -5'
21703 5' -57.9 NC_004812.1 + 82694 0.66 0.860254
Target:  5'- aGGCgCCGCuGGGcGCCGgccgacggcGGCUCgcccgaGCCc -3'
miRNA:   3'- -CCG-GGCG-CCC-CGGC---------UCGAGaaaa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.