miRNA display CGI


Results 21 - 40 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 3' -57 NC_004812.1 + 30674 0.79 0.239209
Target:  5'- cGCGCGAggaaGGGGAGGGGGGGAGggggccGCugGg -3'
miRNA:   3'- uCGCGCU----CCCCUCCUCCUCUU------UGugU- -5'
21706 3' -57 NC_004812.1 + 123469 0.79 0.217083
Target:  5'- -cUGCGGGGGGAGaGAgGGAGggGCGCGa -3'
miRNA:   3'- ucGCGCUCCCCUC-CU-CCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 1969 0.84 0.112299
Target:  5'- gGGCGcCGGGGGGAGGGGGGGAgggGugGCGg -3'
miRNA:   3'- -UCGC-GCUCCCCUCCUCCUCU---UugUGU- -5'
21706 3' -57 NC_004812.1 + 40509 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 6073 0.78 0.26948
Target:  5'- aGGCGCGGGGGGugggaaggaGGGAGGGGAGGgGgAg -3'
miRNA:   3'- -UCGCGCUCCCC---------UCCUCCUCUUUgUgU- -5'
21706 3' -57 NC_004812.1 + 23180 0.78 0.245027
Target:  5'- uGCGCGGGGGaGGGGAGGGcGAGggguGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUCCUCCU-CUU----UGUGU- -5'
21706 3' -57 NC_004812.1 + 30366 0.8 0.206691
Target:  5'- cGCGCGcGGcGGGGGAGGGGAGGgGCGg -3'
miRNA:   3'- uCGCGCuCC-CCUCCUCCUCUUUgUGU- -5'
21706 3' -57 NC_004812.1 + 153456 0.87 0.071692
Target:  5'- gGGCGCGGGGGGGGGcGGAGGggAGCGCGg -3'
miRNA:   3'- -UCGCGCUCCCCUCCuCCUCU--UUGUGU- -5'
21706 3' -57 NC_004812.1 + 23128 0.78 0.245027
Target:  5'- uGCGCGGGGGaGGGGAGGGcGAGggguGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUCCUCCU-CUU----UGUGU- -5'
21706 3' -57 NC_004812.1 + 106753 0.87 0.069804
Target:  5'- gGGCGCGGGGGGGucGGAGGAGggGCGg- -3'
miRNA:   3'- -UCGCGCUCCCCU--CCUCCUCuuUGUgu -5'
21706 3' -57 NC_004812.1 + 35676 0.8 0.211833
Target:  5'- gGGCGCGguGGGGGAGGGGGcGggGCGa- -3'
miRNA:   3'- -UCGCGC--UCCCCUCCUCCuCuuUGUgu -5'
21706 3' -57 NC_004812.1 + 22972 0.78 0.245027
Target:  5'- uGCGCGGGGGaGGGGAGGGcGAGggguGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUCCUCCU-CUU----UGUGU- -5'
21706 3' -57 NC_004812.1 + 149400 0.82 0.156959
Target:  5'- aGGCgagGCGAGGGGAGGGGGAGGAGgGa- -3'
miRNA:   3'- -UCG---CGCUCCCCUCCUCCUCUUUgUgu -5'
21706 3' -57 NC_004812.1 + 29438 0.82 0.137079
Target:  5'- cGGaCGCGGGGGGGGGGGGAGGGgggacgggcgggccGCGCGg -3'
miRNA:   3'- -UC-GCGCUCCCCUCCUCCUCUU--------------UGUGU- -5'
21706 3' -57 NC_004812.1 + 40686 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 40548 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 30827 0.77 0.302764
Target:  5'- gGGC-CGAGGGGGGGGGGGGggGgGg- -3'
miRNA:   3'- -UCGcGCUCCCCUCCUCCUCuuUgUgu -5'
21706 3' -57 NC_004812.1 + 34003 0.78 0.26948
Target:  5'- gGGgGgGAGGGGAGGGGGAGGGAg--- -3'
miRNA:   3'- -UCgCgCUCCCCUCCUCCUCUUUgugu -5'
21706 3' -57 NC_004812.1 + 24132 0.78 0.250963
Target:  5'- gGGgGCGGGGGuGGGGgaAGGGGggGCGCGa -3'
miRNA:   3'- -UCgCGCUCCC-CUCC--UCCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 23232 0.78 0.245027
Target:  5'- uGCGCGGGGGaGGGGAGGGcGAGggguGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUCCUCCU-CUU----UGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.