miRNA display CGI


Results 21 - 40 of 337 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 3' -57 NC_004812.1 + 29227 0.66 0.865725
Target:  5'- gGGgGCGGGcGGGGGucgcGGAGGAGCGg- -3'
miRNA:   3'- -UCgCGCUCcCCUCCu---CCUCUUUGUgu -5'
21706 3' -57 NC_004812.1 + 72044 0.66 0.865725
Target:  5'- aGGCGgugGAGGGGGGGGcugcccgcGGuuuccGGAAGCGCGg -3'
miRNA:   3'- -UCGCg--CUCCCCUCCU--------CC-----UCUUUGUGU- -5'
21706 3' -57 NC_004812.1 + 121873 0.66 0.865725
Target:  5'- cGGCGCaGAGGGGcGGGgccuGGGGcGggGcCGCAg -3'
miRNA:   3'- -UCGCG-CUCCCC-UCC----UCCU-CuuU-GUGU- -5'
21706 3' -57 NC_004812.1 + 7516 0.66 0.865725
Target:  5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3'
miRNA:   3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5'
21706 3' -57 NC_004812.1 + 71124 0.66 0.865725
Target:  5'- aGGCGCGGGcgccucGGGGGuucGGGGgcGCGCGa -3'
miRNA:   3'- -UCGCGCUCc-----CCUCCu--CCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 38417 0.66 0.865725
Target:  5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3'
miRNA:   3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5'
21706 3' -57 NC_004812.1 + 37551 0.66 0.865725
Target:  5'- gGGgGUGGGGGaGAuGGGGGAG-AGCGgGg -3'
miRNA:   3'- -UCgCGCUCCC-CU-CCUCCUCuUUGUgU- -5'
21706 3' -57 NC_004812.1 + 25573 0.66 0.865725
Target:  5'- cGaCGaCGAcGGGGAGGAcGGcGGGGACGCc -3'
miRNA:   3'- uC-GC-GCU-CCCCUCCU-CC-UCUUUGUGu -5'
21706 3' -57 NC_004812.1 + 11439 0.66 0.864977
Target:  5'- cGGCGgGAGggugccgggagccGGGAGGGGGAaaggaaGAAACGgAa -3'
miRNA:   3'- -UCGCgCUC-------------CCCUCCUCCU------CUUUGUgU- -5'
21706 3' -57 NC_004812.1 + 35751 0.66 0.864977
Target:  5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3'
miRNA:   3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5'
21706 3' -57 NC_004812.1 + 4850 0.66 0.864977
Target:  5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3'
miRNA:   3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5'
21706 3' -57 NC_004812.1 + 39852 0.66 0.858155
Target:  5'- cGGUGCGGGGGGccGGGGGcuccgccauGGCGCGu -3'
miRNA:   3'- -UCGCGCUCCCCu-CCUCCucu------UUGUGU- -5'
21706 3' -57 NC_004812.1 + 56602 0.66 0.858155
Target:  5'- cGCGCGGGGGGGuGAuGAG-GugGCAg -3'
miRNA:   3'- uCGCGCUCCCCUcCUcCUCuUugUGU- -5'
21706 3' -57 NC_004812.1 + 35659 0.66 0.858155
Target:  5'- cGCGCGGGGGucGGGGGcucuGugGCGCc -3'
miRNA:   3'- uCGCGCUCCCcuCCUCCu---CuuUGUGu -5'
21706 3' -57 NC_004812.1 + 122507 0.66 0.858155
Target:  5'- uGCG-GAGGGGcGGAGaGAGAGAgAa- -3'
miRNA:   3'- uCGCgCUCCCCuCCUC-CUCUUUgUgu -5'
21706 3' -57 NC_004812.1 + 153408 0.66 0.858155
Target:  5'- uGCG-GAGGGGcGGAGaGAGAGAgAa- -3'
miRNA:   3'- uCGCgCUCCCCuCCUC-CUCUUUgUgu -5'
21706 3' -57 NC_004812.1 + 80614 0.66 0.858155
Target:  5'- gGGCucgGUGGGGGGuccgcGGuGGAGAGGgGCGg -3'
miRNA:   3'- -UCG---CGCUCCCCu----CCuCCUCUUUgUGU- -5'
21706 3' -57 NC_004812.1 + 88704 0.66 0.850384
Target:  5'- cGGUaCGAGGGcGAGuGGGAGAGGCuGCGc -3'
miRNA:   3'- -UCGcGCUCCC-CUCcUCCUCUUUG-UGU- -5'
21706 3' -57 NC_004812.1 + 20662 0.66 0.850384
Target:  5'- cGcCGCGuGGGaGAGcGAGGAGGuggcgGACGCc -3'
miRNA:   3'- uC-GCGCuCCC-CUC-CUCCUCU-----UUGUGu -5'
21706 3' -57 NC_004812.1 + 120874 0.66 0.850384
Target:  5'- uGGCGCuGuagcGGGGcGGGGcGGAGACGCGg -3'
miRNA:   3'- -UCGCG-Cu---CCCCuCCUCcUCUUUGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.