miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 395 0.66 0.40687
Target:  5'- uCUCUCCCCCCCgUCCCUcucCCCAg-- -3'
miRNA:   3'- -GGGGGGGGGGGgGGGGAac-GGGUgac -5'
21706 5' -68.3 NC_004812.1 + 79679 0.66 0.40687
Target:  5'- gCCCCCgCCCaCCUCgCCUCggggUGCUC-CUGg -3'
miRNA:   3'- -GGGGG-GGG-GGGG-GGGGa---ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 154786 0.66 0.391238
Target:  5'- gUCCCCUCCCCCgacggggcggCCCCgacGUCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGG----------GGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 1332 0.66 0.399005
Target:  5'- gCgCCCCgCCCCUCCCCgguuuggcGUCCGCc- -3'
miRNA:   3'- -GgGGGGgGGGGGGGGGaa------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 22638 0.66 0.38357
Target:  5'- gCCCCCCgCCaCCCgggggCUCCCgcgUGCCCGg-- -3'
miRNA:   3'- -GGGGGG-GG-GGG-----GGGGGa--ACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 34731 0.66 0.38357
Target:  5'- gCCCCgCCCCaggCCCCgCCCCUcUGCgCCG-UGg -3'
miRNA:   3'- -GGGG-GGGG---GGGG-GGGGA-ACG-GGUgAC- -5'
21706 5' -68.3 NC_004812.1 + 34850 0.66 0.38357
Target:  5'- gCCCCCgCCUCCCggaggcccggcgCCCCCccGCCgCGCg- -3'
miRNA:   3'- -GGGGG-GGGGGG------------GGGGGaaCGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 139856 0.67 0.353192
Target:  5'- gCCCCCgCgCCCCCCgacugagCCCCagGCCCcCUc -3'
miRNA:   3'- -GGGGG-G-GGGGGG-------GGGGaaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 125506 0.67 0.325911
Target:  5'- gCCCCCCCUCCCCgcguuUCCgggGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGG-----GGGaa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 2967 0.67 0.325911
Target:  5'- gCgCCCUCUCCCCgCCC--GCCCGCa- -3'
miRNA:   3'- -GgGGGGGGGGGGgGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 76234 0.67 0.343921
Target:  5'- gCCCCCgaaCUCCCCCUCgcaggcggccagGCCCGCg- -3'
miRNA:   3'- gGGGGGg--GGGGGGGGGaa----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 545 0.67 0.346755
Target:  5'- gCCCUCCCgCCUCCCgCCCcgGCgCGCg- -3'
miRNA:   3'- -GGGGGGG-GGGGGG-GGGaaCGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 165 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 2421 0.67 0.325911
Target:  5'- gUCCCCCCCgCCCCCCUgcgguuuCUCAUc- -3'
miRNA:   3'- gGGGGGGGGgGGGGGGAac-----GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 112304 0.67 0.346755
Target:  5'- gCCCUCCCUCUCCgCCCCc-GCCC-Cg- -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGaaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 119831 0.67 0.361173
Target:  5'- gCCCgCgCCCgCgCCCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGgGgGGG-G-GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 80672 0.67 0.346755
Target:  5'- uCCCCUCCUCCCgcaCCUCCagGUCC-CUGg -3'
miRNA:   3'- -GGGGGGGGGGG---GGGGGaaCGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 119071 0.67 0.346755
Target:  5'- cUCCCCCaCCCCCUCCCCU--CUCuCUu -3'
miRNA:   3'- -GGGGGG-GGGGGGGGGGAacGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 43361 0.67 0.346755
Target:  5'- aCgUCCaCCCCCCCCgCgagcgGCCCACc- -3'
miRNA:   3'- gGgGGG-GGGGGGGGgGaa---CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 156575 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.