miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 2967 0.67 0.325911
Target:  5'- gCgCCCUCUCCCCgCCC--GCCCGCa- -3'
miRNA:   3'- -GgGGGGGGGGGGgGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 125506 0.67 0.325911
Target:  5'- gCCCCCCCUCCCCgcguuUCCgggGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGG-----GGGaa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 2421 0.67 0.325911
Target:  5'- gUCCCCCCCgCCCCCCUgcgguuuCUCAUc- -3'
miRNA:   3'- gGGGGGGGGgGGGGGGAac-----GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 113558 0.67 0.361173
Target:  5'- cCCCCgcaCCCCCaCCgCCCCCgcaccCCCACc- -3'
miRNA:   3'- -GGGG---GGGGG-GG-GGGGGaac--GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 592 0.67 0.361173
Target:  5'- gCCCCCggccccgggcgUCCCCUCCCCC--GCgCCGCg- -3'
miRNA:   3'- -GGGGG-----------GGGGGGGGGGGaaCG-GGUGac -5'
21706 5' -68.3 NC_004812.1 + 545 0.67 0.346755
Target:  5'- gCCCUCCCgCCUCCCgCCCcgGCgCGCg- -3'
miRNA:   3'- -GGGGGGG-GGGGGG-GGGaaCGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 16965 0.67 0.353912
Target:  5'- uCUCCCCUgCCCCUCUCUcgGCCC-Cg- -3'
miRNA:   3'- -GGGGGGGgGGGGGGGGAa-CGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 11955 0.67 0.361173
Target:  5'- uCCUCCgUCCCgCCCUCCUcgUGuCCCGCg- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGA--AC-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 156575 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 41310 0.68 0.27494
Target:  5'- uUCCCCCCCCCacaaCCCCgguccGgCCGCg- -3'
miRNA:   3'- gGGGGGGGGGGg---GGGGaa---CgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 149870 0.68 0.287056
Target:  5'- aCCCCCCacuaaCUCCCUCUCUUGUUCugUc -3'
miRNA:   3'- -GGGGGGg----GGGGGGGGGAACGGGugAc -5'
21706 5' -68.3 NC_004812.1 + 34378 0.68 0.280946
Target:  5'- gCCCCgCCgCCgagCCCCCCgcGCCCGCc- -3'
miRNA:   3'- -GGGGgGGgGG---GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 66112 0.68 0.27494
Target:  5'- gCCCCCUCCCCgCgCCCU--CCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGgGgGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 83038 0.68 0.280946
Target:  5'- aCCCCCCaCCCCagCCCggagGUCCGCg- -3'
miRNA:   3'- gGGGGGG-GGGGggGGGaa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 119664 0.68 0.30861
Target:  5'- gCCUUCCCCUCgCCgCCCUacggcgcgcagucgcUGCCCGCg- -3'
miRNA:   3'- -GGGGGGGGGGgGG-GGGA---------------ACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 142145 0.68 0.299588
Target:  5'- gCCCCgCCCCCgCgCCCUccgGCCaCACg- -3'
miRNA:   3'- -GGGGgGGGGGgGgGGGAa--CGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 142912 0.68 0.306011
Target:  5'- aCCCgCCagCCCCUCCUgcggGCCCGCg- -3'
miRNA:   3'- gGGGgGGggGGGGGGGAa---CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 50033 0.68 0.302145
Target:  5'- cCCCCCCgcgggCCCCCUggcgauuaacguggaCCaCCgcGCCCGCUGc -3'
miRNA:   3'- -GGGGGG-----GGGGGG---------------GG-GGaaCGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 120326 0.68 0.299588
Target:  5'- aCCCCgaCCCCCCUCCCgCCgcgggagaGCCCGaguCUGc -3'
miRNA:   3'- -GGGG--GGGGGGGGGG-GGaa------CGGGU---GAC- -5'
21706 5' -68.3 NC_004812.1 + 9969 0.68 0.287056
Target:  5'- cCCUCCCCaCCCCacaaCCCCCagcuccaucCCCGCUGu -3'
miRNA:   3'- -GGGGGGG-GGGG----GGGGGaac------GGGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.